Started by upstream project "BIOFORMATS-test-repo" build number 251 originally caused by: Started by upstream project "Trigger" build number 275 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins10581062266196038289.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39522_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:50:36,929 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:50:36,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:50:36,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:50:36,931 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:50:36,932 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:50:36,932 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:50:36,932 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:50:36,932 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:50:36,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:50:36,933 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:50:36,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:50:36,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:50:37,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:50:37,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:50:37,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:50:37,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:50:37,122 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:50:37,122 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:50:37,122 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:50:37,123 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:50:37,123 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:50:37,124 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:50:37,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-10 00:50:37,132] [main] java.version = 17.0.2 [testng] 00:50:37,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:50:37,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:37,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-10_00-50-37.log] [testng] 00:50:37,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-10 00:50:37,178] [main] testng.directory = /data [testng] [2024-11-10 00:50:37,178] [main] testng.configDirectory = /config [testng] [2024-11-10 00:50:37,186] [main] testng.multiplier = 1.0 [testng] [2024-11-10 00:50:37,187] [main] testng.in-memory = false [testng] [2024-11-10 00:50:37,187] [main] testng.allow-missing = false [testng] [2024-11-10 00:50:37,187] [main] user.language = en [testng] [2024-11-10 00:50:37,187] [main] user.country = ${user.country} [testng] [2024-11-10 00:50:37,187] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-10 00:51:14,592] [main] ---------------------------------------- [testng] [2024-11-10 00:51:14,592] [main] Total files: 259 [testng] [2024-11-10 00:51:14,592] [main] Scan time: 37.405 s (144 ms/file) [testng] [2024-11-10 00:51:14,592] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-10 01:00:33,334] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 01:00:33,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:00:33,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:33,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-10_01-00-33.log] [testng] 01:00:33,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51ffba93 - End of configuration. [testng] [2024-11-10 01:00:41,599] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] 01:00:41,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:00:41,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:41,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-10_01-00-41.log] [testng] 01:00:41,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32617acc - End of configuration. [testng] [2024-11-10 01:00:41,895] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] 01:00:41,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:00:41,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:41,896 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-10_01-00-41.log] [testng] 01:00:41,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24ae2e86 - End of configuration. [testng] [2024-11-10 01:00:42,104] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] 01:00:42,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:00:42,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:42,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-10_01-00-42.log] [testng] 01:00:42,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@492fdcde - End of configuration. [testng] [2024-11-10 01:00:42,499] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] 01:00:42,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:00:42,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:42,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-10_01-00-42.log] [testng] 01:00:42,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c6e3370 - End of configuration. [testng] [2024-11-10 01:00:42,652] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] 01:00:42,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:00:42,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:42,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-10_01-00-42.log] [testng] 01:00:42,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8364c3c - End of configuration. [testng] [2024-11-10 01:00:42,918] [pool-1-thread-7] Initializing /data/brian/PA-GFP-3.oib: [testng] 01:00:42,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:00:42,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:42,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-10_01-00-42.log] [testng] 01:00:42,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fcb720b - End of configuration. [testng] [2024-11-10 01:00:43,339] [pool-1-thread-6] Initializing /data/stefan/cytosol_03e.oib: [testng] 01:00:43,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:00:43,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:43,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-10_01-00-43.log] [testng] 01:00:43,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14905b4d - End of configuration. [testng] [2024-11-10 01:00:44,046] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 01:00:44,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:00:44,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:44,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-10_01-00-44.log] [testng] 01:00:44,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d0197e - End of configuration. [testng] [2024-11-10 01:00:44,465] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] 01:00:44,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:00:44,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:44,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-10_01-00-44.log] [testng] 01:00:44,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@255e6859 - End of configuration. [testng] [2024-11-10 01:00:44,741] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] 01:00:44,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:00:44,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:44,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-10_01-00-44.log] [testng] 01:00:44,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a87b0b0 - End of configuration. [testng] [2024-11-10 01:00:46,245] [pool-1-thread-2] Initializing /data/glen/Null file/test no change.oif: [testng] 01:00:46,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:00:46,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:46,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-10_01-00-46.log] [testng] 01:00:46,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47b92663 - End of configuration. [testng] [2024-11-10 01:00:51,677] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-10 01:00:52,395] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-10 01:00:52,828] [pool-1-thread-12] Initializing /data/marc/V0606L.oib: [testng] [2024-11-10 01:00:54,494] [pool-1-thread-4] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-10 01:01:01,738] [pool-1-thread-7] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-10 01:01:04,274] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-10 01:01:06,696] [pool-1-thread-11] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-10 01:01:08,128] [pool-1-thread-9] Initializing /data/glen/simulstack.oib: [testng] [2024-11-10 01:01:10,611] [pool-1-thread-6] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-10 01:01:12,533] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-10 01:01:14,628] [pool-1-thread-9] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-10 01:01:15,824] [pool-1-thread-2] Initializing /data/marc/V0606J.oib: [testng] [2024-11-10 01:01:17,621] [pool-1-thread-7] Initializing /data/glen/simulstack.oif: [testng] [2024-11-10 01:01:19,659] [pool-1-thread-12] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-11-10 01:01:21,825] [pool-1-thread-9] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-10 01:01:22,281] [pool-1-thread-11] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-10 01:01:28,963] [pool-1-thread-9] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-10 01:01:36,445] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-10 01:01:41,497] [pool-1-thread-8] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-10 01:01:43,154] [pool-1-thread-2] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-10 01:01:45,143] [pool-1-thread-8] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-10 01:01:48,250] [pool-1-thread-12] Initializing /data/allan/62909#1.oib: [testng] [2024-11-10 01:01:48,653] [pool-1-thread-8] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-10 01:01:49,086] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-10 01:01:51,973] [pool-1-thread-12] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-10 01:01:53,523] [pool-1-thread-8] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-11-10 01:01:54,170] [pool-1-thread-2] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-10 01:02:03,490] [pool-1-thread-8] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-10 01:02:04,165] [pool-1-thread-12] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-10 01:02:07,141] [pool-1-thread-9] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-10 01:02:08,402] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-10 01:02:09,910] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-10 01:02:14,432] [pool-1-thread-9] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-10 01:02:15,893] [pool-1-thread-8] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-10 01:02:16,901] [pool-1-thread-12] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-10 01:02:37,145] [pool-1-thread-8] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-10 01:02:39,726] [pool-1-thread-9] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-10 01:02:56,712] [pool-1-thread-5] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-10 01:02:59,145] [pool-1-thread-8] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-10 01:03:25,536] [pool-1-thread-10] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-10 01:04:04,909] [pool-1-thread-5] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-10 01:04:11,201] [pool-1-thread-5] Initializing /data/david/Image0016.oib: [testng] [2024-11-10 01:04:16,167] [pool-1-thread-5] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-10 01:05:10,095] [pool-1-thread-5] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-10 01:05:14,840] [pool-1-thread-5] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-10 01:05:45,993] [pool-1-thread-5] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-10 01:05:53,264] [pool-1-thread-5] Initializing /data/jae/Image0001.oib: [testng] [2024-11-10 01:05:59,751] [pool-1-thread-5] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-10 01:06:08,155] [pool-1-thread-5] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-10 01:06:51,420] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-10 01:06:59,570] [pool-1-thread-5] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-10 01:07:02,535] [pool-1-thread-5] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-10 01:07:09,773] [pool-1-thread-5] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-10 01:07:13,081] [pool-1-thread-5] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-10 01:10:40,048] [pool-1-thread-6] Initializing /data/johannes/step4.bmp: [testng] [2024-11-10 01:10:42,677] [pool-1-thread-6] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-10 01:10:48,783] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-10 01:10:59,428] [pool-1-thread-6] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-10 01:11:03,126] [pool-1-thread-6] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-10 01:11:38,155] [pool-1-thread-6] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-10 01:11:43,273] [pool-1-thread-6] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-10 01:19:18,165] [pool-1-thread-7] Initializing /data/sten/01.oib: [testng] [2024-11-10 01:19:23,898] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-10 01:19:29,535] [pool-1-thread-7] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-10 01:21:24,140] [pool-1-thread-11] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-10 01:21:30,036] [pool-1-thread-11] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-10 01:22:36,570] [pool-1-thread-11] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-10 01:22:49,710] [pool-1-thread-11] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-10 01:22:57,688] [pool-1-thread-11] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-10 01:23:07,443] [pool-1-thread-11] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-10 01:23:16,506] [pool-1-thread-11] Initializing /data/aryeh/1h.oib: [testng] [2024-11-10 01:23:30,849] [pool-1-thread-11] Initializing /data/glen/111407.oif: [testng] [2024-11-10 01:24:50,707] [pool-1-thread-4] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-10 01:25:02,203] [pool-1-thread-4] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-10 01:25:11,416] [pool-1-thread-4] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-11-10 01:31:44,389] [pool-1-thread-8] Initializing /data/monica/Image0056.oif: [testng] [2024-11-10 01:33:31,063] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-10 01:33:42,185] [pool-1-thread-8] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-10 01:33:52,252] [pool-1-thread-8] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-10 01:34:04,170] [pool-1-thread-8] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-10 01:34:14,467] [pool-1-thread-8] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-10 01:36:33,719] [pool-1-thread-10] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-10 01:37:13,780] [pool-1-thread-3] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-10 01:37:34,186] [pool-1-thread-9] Initializing /data/christian/20min.oif: [testng] [2024-11-10 01:37:50,274] [pool-1-thread-3] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-10 01:38:06,911] [pool-1-thread-9] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-10 01:38:14,666] [pool-1-thread-9] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-10 01:38:35,931] [pool-1-thread-2] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-10 01:38:46,143] [pool-1-thread-2] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-10 01:38:47,807] [pool-1-thread-3] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-10 01:38:57,771] [pool-1-thread-3] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-10 01:39:40,699] [pool-1-thread-2] Initializing /data/glen/Image0002.oif: [testng] [2024-11-10 01:40:36,429] [pool-1-thread-8] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-10 01:40:39,038] [pool-1-thread-8] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-10 01:40:46,138] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-10 01:40:55,051] [pool-1-thread-8] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-10 01:41:03,006] [pool-1-thread-8] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-10 01:41:10,902] [pool-1-thread-8] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-10 01:41:17,739] [pool-1-thread-8] Initializing /data/michael/CELL3.oib: [testng] [2024-11-10 01:41:24,441] [pool-1-thread-8] Initializing /data/brian/FLIP.oib: [testng] [2024-11-10 01:41:33,825] [pool-1-thread-8] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-10 01:41:41,314] [pool-1-thread-8] Initializing /data/johannes/step1.bmp: [testng] [2024-11-10 01:41:44,745] [pool-1-thread-8] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-10 01:42:14,948] [pool-1-thread-9] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-10 01:42:20,540] [pool-1-thread-9] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-10 01:42:51,580] [pool-1-thread-3] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-10 01:42:59,581] [pool-1-thread-3] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-10 01:43:05,870] [pool-1-thread-3] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-10 01:43:09,381] [pool-1-thread-4] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-10 01:43:21,316] [pool-1-thread-3] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-10 01:43:24,519] [pool-1-thread-3] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-10 01:44:35,026] [pool-1-thread-12] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-10 01:44:44,820] [pool-1-thread-12] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-10 01:45:26,123] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-10 01:45:35,185] [pool-1-thread-3] Initializing /data/karl/Image0009.oib: [testng] [2024-11-10 01:45:41,925] [pool-1-thread-3] Initializing /data/molly/11OCT2.OIF: [testng] [2024-11-10 01:47:53,272] [pool-1-thread-11] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-10 01:48:00,326] [pool-1-thread-11] Initializing /data/johannes/step3.bmp: [testng] [2024-11-10 01:48:03,589] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-10 01:48:12,303] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-10 01:48:21,372] [pool-1-thread-11] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-10 01:48:28,696] [pool-1-thread-11] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-10 01:51:02,388] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-10 01:51:14,289] [pool-1-thread-6] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-10 01:51:41,458] [pool-1-thread-10] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-10 01:51:50,807] [pool-1-thread-10] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-11-10 01:52:47,505] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-10 01:53:00,613] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-10 02:05:06,831] [pool-1-thread-6] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-10 02:05:13,525] [pool-1-thread-6] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-10 02:05:21,868] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-10 02:05:30,460] [pool-1-thread-6] Initializing /data/johannes/step2.bmp: [testng] 02:25:38,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:25:38,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:38,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-10_02-25-38.log] [testng] 02:25:38,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@769e9f17 - End of configuration. [testng] 03:09:02,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:09:02,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:02,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-10_03-09-02.log] [testng] 03:09:02,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5345b033 - End of configuration. [testng] 03:45:48,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:45:48,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:48,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-10_03-45-48.log] [testng] 03:45:48,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2643bc23 - End of configuration. [testng] 03:52:51,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:52:51,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:51,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-10_03-52-51.log] [testng] 03:52:51,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f467bb9 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 182 minutes 17 seconds Finished: SUCCESS