Started by upstream project "BIOFORMATS-test-repo" build number 252
originally caused by:
Started by upstream project "Trigger" build number 276
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15318577604880860987.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39687_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:53:40,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:53:40,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:53:40,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:53:40,401 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:53:40,402 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:53:40,402 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:53:40,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:53:40,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:53:40,403 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:53:40,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:53:40,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:53:40,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:53:40,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:53:40,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:53:40,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:53:40,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:53:40,699 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:53:40,699 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:53:40,699 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:53:40,700 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:53:40,700 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:53:40,701 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:53:40,701 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 298 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-11 00:53:40,712] [main] java.version = 1.8.0_342
[testng] 00:53:40,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:53:40,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:40,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-11_00-53-40.log]
[testng] 00:53:40,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-11 00:53:40,785] [main] testng.directory = /data
[testng] [2024-11-11 00:53:40,785] [main] testng.configDirectory = /config
[testng] [2024-11-11 00:53:40,797] [main] testng.multiplier = 1.0
[testng] [2024-11-11 00:53:40,798] [main] testng.in-memory = false
[testng] [2024-11-11 00:53:40,798] [main] testng.allow-missing = false
[testng] [2024-11-11 00:53:40,798] [main] user.language = fr
[testng] [2024-11-11 00:53:40,798] [main] user.country = FR
[testng] [2024-11-11 00:53:40,798] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-11 00:53:43,056] [main] ----------------------------------------
[testng] [2024-11-11 00:53:43,056] [main] Total files: 14
[testng] [2024-11-11 00:53:43,056] [main] Scan time: 2.258 s (161 ms/file)
[testng] [2024-11-11 00:53:43,057] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-11 00:54:11,525] [pool-1-thread-1] Initializing /data/samples/BigTIFF.tif:
[testng] 00:54:11,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:54:11,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:11,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-11_00-54-11.log]
[testng] 00:54:11,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12ba8 - End of configuration.
[testng] [2024-11-11 00:54:12,183] [pool-1-thread-12] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 00:54:12,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:54:12,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:12,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-11_00-54-12.log]
[testng] 00:54:12,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a9f7675 - End of configuration.
[testng] [2024-11-11 00:54:12,880] [pool-1-thread-11] Initializing /data/samples/BigTIFFLong.tif:
[testng] 00:54:12,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:54:12,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:12,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-11_00-54-12.log]
[testng] 00:54:12,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aaa01e1 - End of configuration.
[testng] [2024-11-11 00:54:13,524] [pool-1-thread-10] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 00:54:13,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:54:13,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:13,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-11_00-54-13.log]
[testng] 00:54:13,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@781cddf4 - End of configuration.
[testng] [2024-11-11 00:54:16,684] [pool-1-thread-9] Initializing /data/samples/Classic.tif:
[testng] 00:54:16,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:54:16,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:16,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-11_00-54-16.log]
[testng] 00:54:16,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1274e150 - End of configuration.
[testng] [2024-11-11 00:54:18,302] [pool-1-thread-8] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 00:54:18,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:54:18,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:18,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-11_00-54-18.log]
[testng] 00:54:18,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37e4106e - End of configuration.
[testng] [2024-11-11 00:54:19,037] [pool-1-thread-7] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 00:54:19,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:54:19,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:19,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-11_00-54-19.log]
[testng] 00:54:19,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a7d9a65 - End of configuration.
[testng] [2024-11-11 00:54:19,681] [pool-1-thread-6] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 00:54:19,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:54:19,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:19,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-11_00-54-19.log]
[testng] 00:54:19,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50c1a514 - End of configuration.
[testng] [2024-11-11 00:54:20,105] [pool-1-thread-5] Initializing /data/carlsen/Olympics8.tif:
[testng] 00:54:20,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:54:20,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:20,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-11_00-54-20.log]
[testng] 00:54:20,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35dd7b68 - End of configuration.
[testng] [2024-11-11 00:54:20,590] [pool-1-thread-4] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 00:54:20,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:54:20,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:20,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-11_00-54-20.log]
[testng] 00:54:20,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c8cc08c - End of configuration.
[testng] [2024-11-11 00:54:21,082] [pool-1-thread-3] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 00:54:21,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:54:21,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:21,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-11_00-54-21.log]
[testng] 00:54:21,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ae5a087 - End of configuration.
[testng] [2024-11-11 00:54:22,475] [pool-1-thread-2] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 00:54:22,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:54:22,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:22,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-11_00-54-22.log]
[testng] 00:54:22,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50b8330a - End of configuration.
[testng] [2024-11-11 00:54:33,408] [pool-1-thread-9] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 11 seconds
Finished: SUCCESS