Started by upstream project "BIOFORMATS-test-repo" build number 252
originally caused by:
Started by upstream project "Trigger" build number 276
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5983853863302922246.sh
+ '[' fluoview = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39743_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 03:43:17,680 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:43:17,682 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 03:43:17,682 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:43:17,684 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:43:17,684 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:43:17,684 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:43:17,684 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:43:17,684 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:43:17,685 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:43:17,685 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:43:17,685 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:43:17,685 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:43:17,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:43:17,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:43:17,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:43:17,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:43:17,964 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:43:17,964 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:43:17,964 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:43:17,965 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:43:17,965 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 03:43:17,966 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 03:43:17,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 281 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-11 03:43:17,976] [main] java.version = 1.8.0_342
[testng] 03:43:17,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:43:17,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:43:18,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-11_03-43-17.log]
[testng] 03:43:18,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-11 03:43:18,032] [main] testng.directory = /data
[testng] [2024-11-11 03:43:18,032] [main] testng.configDirectory = /config
[testng] [2024-11-11 03:43:18,045] [main] testng.multiplier = 1.0
[testng] [2024-11-11 03:43:18,045] [main] testng.in-memory = false
[testng] [2024-11-11 03:43:18,045] [main] testng.allow-missing = false
[testng] [2024-11-11 03:43:18,045] [main] user.language = fr
[testng] [2024-11-11 03:43:18,045] [main] user.country = FR
[testng] [2024-11-11 03:43:18,045] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-11 03:43:21,608] [main] ----------------------------------------
[testng] [2024-11-11 03:43:21,608] [main] Total files: 14
[testng] [2024-11-11 03:43:21,608] [main] Scan time: 3.563 s (254 ms/file)
[testng] [2024-11-11 03:43:21,608] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-11 03:43:45,915] [pool-1-thread-1] Initializing /data/shalin/40xNA0.6-512x512.tif:
[testng] 03:43:45,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:43:45,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:43:45,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-11_03-43-45.log]
[testng] 03:43:45,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9677448 - End of configuration.
[testng] [2024-11-11 03:43:47,454] [pool-1-thread-12] Initializing /data/timg/eric-one-3d.tif:
[testng] 03:43:47,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:43:47,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:43:47,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-11_03-43-47.log]
[testng] 03:43:47,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b2ddf71 - End of configuration.
[testng] [2024-11-11 03:43:48,700] [pool-1-thread-11] Initializing /data/brian/DBTRG 2X 1a-1.tif:
[testng] 03:43:48,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:43:48,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:43:48,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-11_03-43-48.log]
[testng] 03:43:48,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a5c17f6 - End of configuration.
[testng] [2024-11-11 03:43:49,906] [pool-1-thread-10] Initializing /data/timg/E1-v2(11 som).tif:
[testng] 03:43:49,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:43:49,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:43:49,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-11_03-43-49.log]
[testng] 03:43:49,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@608f2855 - End of configuration.
[testng] [2024-11-11 03:43:51,584] [pool-1-thread-9] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif:
[testng] 03:43:51,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:43:51,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:43:51,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-11_03-43-51.log]
[testng] 03:43:51,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e437155 - End of configuration.
[testng] [2024-11-11 03:43:52,687] [pool-1-thread-8] Initializing /data/aaron/olympus_fv500.tif:
[testng] 03:43:52,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:43:52,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:43:52,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-11_03-43-52.log]
[testng] 03:43:52,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a108031 - End of configuration.
[testng] [2024-11-11 03:43:53,884] [pool-1-thread-7] Initializing /data/timg/eric-three.tif:
[testng] 03:43:53,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:43:53,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:43:53,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-11_03-43-53.log]
[testng] 03:43:53,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31a0ee07 - End of configuration.
[testng] [2024-11-11 03:43:55,333] [pool-1-thread-6] Initializing /data/timg/LiveTwo.tif:
[testng] 03:43:55,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:43:55,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:43:55,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-11_03-43-55.log]
[testng] 03:43:55,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@568c57fb - End of configuration.
[testng] [2024-11-11 03:43:56,557] [pool-1-thread-5] Initializing /data/timg/LiveThree-xyzt.tif:
[testng] 03:43:56,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:43:56,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:43:56,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-11_03-43-56.log]
[testng] 03:43:56,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6907edc2 - End of configuration.
[testng] [2024-11-11 03:43:57,950] [pool-1-thread-4] Initializing /data/timg/LiveOne.tif:
[testng] 03:43:57,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:43:57,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:43:57,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-11_03-43-57.log]
[testng] 03:43:57,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@356da2d4 - End of configuration.
[testng] [2024-11-11 03:43:59,480] [pool-1-thread-3] Initializing /data/timg/eric-three-projection.tif:
[testng] 03:43:59,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:43:59,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:43:59,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-11_03-43-59.log]
[testng] 03:43:59,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d6b8a40 - End of configuration.
[testng] [2024-11-11 03:44:00,984] [pool-1-thread-2] Initializing /data/timg/eric-one.tif:
[testng] 03:44:00,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:44:00,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:44:00,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-11_03-44-00.log]
[testng] 03:44:00,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b808c1 - End of configuration.
[testng] [2024-11-11 03:44:13,525] [pool-1-thread-4] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 11 seconds
Finished: SUCCESS