Started by upstream project "BIOFORMATS-test-repo" build number 252
originally caused by:
Started by upstream project "Trigger" build number 276
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins11758482732289438453.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39787_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 04:59:48,685 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:59:48,687 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 04:59:48,687 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:59:48,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:59:48,688 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:59:48,688 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:59:48,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:59:48,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:59:48,689 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:59:48,689 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:59:48,689 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:59:48,689 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:59:48,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:59:48,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:59:48,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:59:48,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:59:48,960 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:59:48,960 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:59:48,960 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:59:48,961 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:59:48,961 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 04:59:48,962 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 04:59:48,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-11 04:59:48,972] [main] java.version = 1.8.0_342
[testng] 04:59:48,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:59:48,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:59:49,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-11_04-59-48.log]
[testng] 04:59:49,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-11 04:59:49,024] [main] testng.directory = /data
[testng] [2024-11-11 04:59:49,024] [main] testng.configDirectory = /config
[testng] [2024-11-11 04:59:49,036] [main] testng.multiplier = 1.0
[testng] [2024-11-11 04:59:49,036] [main] testng.in-memory = false
[testng] [2024-11-11 04:59:49,037] [main] testng.allow-missing = false
[testng] [2024-11-11 04:59:49,037] [main] user.language = fr
[testng] [2024-11-11 04:59:49,037] [main] user.country = FR
[testng] [2024-11-11 04:59:49,037] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-11 05:00:30,646] [main] ----------------------------------------
[testng] [2024-11-11 05:00:30,647] [main] Total files: 944
[testng] [2024-11-11 05:00:30,647] [main] Scan time: 41.609 s (44 ms/file)
[testng] [2024-11-11 05:00:30,647] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-11 05:02:58,542] [pool-1-thread-1] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif:
[testng] 05:02:58,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:02:58,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:58,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-11_05-02-58.log]
[testng] 05:02:58,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@331ccc43 - End of configuration.
[testng] [2024-11-11 05:03:00,894] [pool-1-thread-12] Initializing /data/stjude/Antoday1dblmysglGRP.tif:
[testng] 05:03:00,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:03:00,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:00,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-11_05-03-00.log]
[testng] 05:03:00,896 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c4d8b04 - End of configuration.
[testng] [2024-11-11 05:03:03,005] [pool-1-thread-11] Initializing /data/stjude/AntoDay4dblmyGRP.tif:
[testng] 05:03:03,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:03:03,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:03,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-11_05-03-03.log]
[testng] 05:03:03,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@463b83b6 - End of configuration.
[testng] [2024-11-11 05:03:04,987] [pool-1-thread-10] Initializing /data/primate/Leica_Image.tif:
[testng] 05:03:04,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:03:04,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:04,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-11_05-03-04.log]
[testng] 05:03:04,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f1293b6 - End of configuration.
[testng] [2024-11-11 05:03:06,897] [pool-1-thread-9] Initializing /data/brian/Series002_z00_ch00.tif:
[testng] 05:03:06,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:03:06,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:06,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-11_05-03-06.log]
[testng] 05:03:06,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a8ddcf3 - End of configuration.
[testng] [2024-11-11 05:03:08,806] [pool-1-thread-8] Initializing /data/stjude/AntoDayzerocy3OVP.tif:
[testng] 05:03:08,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:03:08,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:08,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-11_05-03-08.log]
[testng] 05:03:08,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5edad2a9 - End of configuration.
[testng] [2024-11-11 05:03:11,034] [pool-1-thread-7] Initializing /data/stjude/AntoDay1dblGRP.tif:
[testng] 05:03:11,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:03:11,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:11,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-11_05-03-11.log]
[testng] 05:03:11,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2276f85c - End of configuration.
[testng] [2024-11-11 05:03:13,001] [pool-1-thread-6] Initializing /data/stjude/AntoDayzerocy3GRP.tif:
[testng] 05:03:13,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:03:13,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:13,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-11_05-03-13.log]
[testng] 05:03:13,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35246331 - End of configuration.
[testng] [2024-11-11 05:03:15,265] [pool-1-thread-5] Initializing /data/stjude/AntoDay4dblmy2GRP.tif:
[testng] 05:03:15,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:03:15,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:15,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-11_05-03-15.log]
[testng] 05:03:15,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189fc54a - End of configuration.
[testng] [2024-11-11 05:03:17,488] [pool-1-thread-4] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif:
[testng] 05:03:17,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:03:17,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:17,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-11_05-03-17.log]
[testng] 05:03:17,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@efa7a4f - End of configuration.
[testng] [2024-11-11 05:04:45,580] [pool-1-thread-3] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif:
[testng] 05:04:45,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:04:45,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:45,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-11_05-04-45.log]
[testng] 05:04:45,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6989bc3a - End of configuration.
[testng] [2024-11-11 05:04:47,573] [pool-1-thread-2] Initializing /data/brian/Series002_z01.tif:
[testng] 05:04:47,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:04:47,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:47,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-11_05-04-47.log]
[testng] 05:04:47,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@509343f0 - End of configuration.
[testng] [2024-11-11 05:05:06,340] [pool-1-thread-10] Initializing /data/martin/Series028_z00_ch00.tif:
[testng] [2024-11-11 05:05:15,507] [pool-1-thread-2] Initializing /data/stjude/Antoday1dblcatsglGRP.tif:
[testng] [2024-11-11 05:05:18,113] [pool-1-thread-11] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF:
[testng] 07:13:11,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:13:11,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:13:11,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-11_07-13-11.log]
[testng] 07:13:11,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25aeb5ac - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 133 minutes 26 seconds
Finished: SUCCESS