Started by upstream project "BIOFORMATS-test-repo" build number 253
originally caused by:
 Started by upstream project "Trigger" build number 277
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins863150572740620760.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39835_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 00:30:50,391 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:30:50,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 00:30:50,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:30:50,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:30:50,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:30:50,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:30:50,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:30:50,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:30:50,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:30:50,396 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:30:50,396 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:30:50,396 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:30:50,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:30:50,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:30:50,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:30:50,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:30:50,620 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:30:50,621 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:30:50,621 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:30:50,621 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:30:50,621 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 00:30:50,622 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 00:30:50,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 227 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-12 00:30:50,632] [main] java.version = 11.0.16
   [testng] 00:30:50,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:30:50,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:30:50,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-12_00-30-50.log]
   [testng] 00:30:50,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-11-12 00:30:50,682] [main] testng.directory = /data
   [testng] [2024-11-12 00:30:50,682] [main] testng.configDirectory = /config
   [testng] [2024-11-12 00:30:50,692] [main] testng.multiplier = 1.0
   [testng] [2024-11-12 00:30:50,694] [main] testng.in-memory = false
   [testng] [2024-11-12 00:30:50,694] [main] testng.allow-missing = false
   [testng] [2024-11-12 00:30:50,694] [main] user.language = en
   [testng] [2024-11-12 00:30:50,694] [main] user.country = ${user.country}
   [testng] [2024-11-12 00:30:50,694] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-12 00:35:54,276] [main] ----------------------------------------
   [testng] [2024-11-12 00:35:54,277] [main] Total files: 226
   [testng] [2024-11-12 00:35:54,277] [main] Scan time: 303.581 s (1343 ms/file)
   [testng] [2024-11-12 00:35:54,277] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 28 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-12 00:40:11,103] [pool-1-thread-1] Initializing /data/fluoview/Sample_XT.tif: 
   [testng] 00:40:11,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 00:40:11,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:40:11,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-12_00-40-11.log]
   [testng] 00:40:11,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11c54b83 - End of configuration.
   [testng] [2024-11-12 00:40:11,439] [pool-1-thread-12] Initializing /data/iplab/Blend_DIC.IPL: 
   [testng] 00:40:11,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 00:40:11,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:40:11,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-12_00-40-11.log]
   [testng] 00:40:11,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@404dde5 - End of configuration.
   [testng] [2024-11-12 00:40:11,494] [pool-1-thread-11] Initializing /data/iplab/Color Histology.IPL: 
   [testng] 00:40:11,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 00:40:11,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:40:11,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-12_00-40-11.log]
   [testng] 00:40:11,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6843944b - End of configuration.
   [testng] [2024-11-12 00:40:11,546] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: 
   [testng] 00:40:11,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 00:40:11,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:40:11,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-12_00-40-11.log]
   [testng] 00:40:11,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3755a3dc - End of configuration.
   [testng] [2024-11-12 00:40:11,591] [pool-1-thread-9] Initializing /data/iplab/Chromosomes.IPL: 
   [testng] 00:40:11,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 00:40:11,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:40:11,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-12_00-40-11.log]
   [testng] 00:40:11,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c89a966 - End of configuration.
   [testng] [2024-11-12 00:40:11,638] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: 
   [testng] 00:40:11,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 00:40:11,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:40:11,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-12_00-40-11.log]
   [testng] 00:40:11,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4db03a09 - End of configuration.
   [testng] [2024-11-12 00:40:11,725] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZTCh.tif: 
   [testng] 00:40:11,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 00:40:11,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:40:11,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-12_00-40-11.log]
   [testng] 00:40:11,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1918466d - End of configuration.
   [testng] [2024-11-12 00:40:12,075] [pool-1-thread-6] Initializing /data/iplab/16Bit XRay.IPL: 
   [testng] 00:40:12,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 00:40:12,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:40:12,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-12_00-40-12.log]
   [testng] 00:40:12,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47d28a68 - End of configuration.
   [testng] [2024-11-12 00:40:12,122] [pool-1-thread-5] Initializing /data/iplab/Blend_Fitc.IPL: 
   [testng] 00:40:12,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 00:40:12,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:40:12,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-12_00-40-12.log]
   [testng] 00:40:12,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3904cf8e - End of configuration.
   [testng] [2024-11-12 00:40:12,174] [pool-1-thread-4] Initializing /data/fluoview/SpineAnimation.tif: 
   [testng] 00:40:12,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 00:40:12,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:40:12,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-12_00-40-12.log]
   [testng] 00:40:12,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cd1cbcc - End of configuration.
   [testng] [2024-11-12 00:40:12,540] [pool-1-thread-3] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: 
   [testng] 00:40:12,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 00:40:12,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:40:12,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-12_00-40-12.log]
   [testng] 00:40:12,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@771d1763 - End of configuration.
   [testng] [2024-11-12 00:40:12,869] [pool-1-thread-2] Initializing /data/iplab/Blend_Tritc.IPL: 
   [testng] 00:40:12,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 00:40:12,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:40:12,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-12_00-40-12.log]
   [testng] 00:40:12,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1190531a - End of configuration.
   [testng] [2024-11-12 00:40:15,365] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: 
   [testng] [2024-11-12 00:40:15,426] [pool-1-thread-11] Initializing /data/fluoview/Sample_TwoCH.TIF: 
   [testng] [2024-11-12 00:40:15,680] [pool-1-thread-9] Initializing /data/fluoview/Sample_XYZ.TIF: 
   [testng] [2024-11-12 00:40:15,937] [pool-1-thread-10] Initializing /data/iplab/Blend_Final.IPL: 
   [testng] [2024-11-12 00:40:15,988] [pool-1-thread-8] Initializing /data/fluoview/sample_labled_XYTCh.tif: 
   [testng] [2024-11-12 00:40:16,273] [pool-1-thread-2] Initializing /data/iplab/3t3 Cell.IPL: 
   [testng] [2024-11-12 00:40:16,307] [pool-1-thread-12] Initializing /data/fluoview/Sample_XYT.TIF: 
   [testng] [2024-11-12 00:40:16,601] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: 
   [testng] [2024-11-12 00:40:18,231] [pool-1-thread-2] Initializing /data/fluoview/Sample_ThreeCH.TIF: 
   [testng] [2024-11-12 00:40:19,018] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.avi: 
   [testng] [2024-11-12 00:40:19,317] [pool-1-thread-7] Initializing /data/iplab/Blend_Dapi.IPL: 
   [testng] [2024-11-12 00:40:19,434] [pool-1-thread-4] Initializing /data/fluoview/sample_labled_XYZCh.tif: 
   [testng] [2024-11-12 00:40:20,064] [pool-1-thread-6] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: 
   [testng] [2024-11-12 00:40:20,623] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: 
   [testng] [2024-11-12 00:40:23,103] [pool-1-thread-7] Initializing /data/iplab/Actin.IPL: 
   [testng] [2024-11-12 00:40:23,581] [pool-1-thread-1] Initializing /data/iplab/10x Blood and Bacteria.IPL: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1484, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 9 minutes 49 seconds
Finished: SUCCESS