Started by upstream project "BIOFORMATS-test-repo" build number 253
originally caused by:
Started by upstream project "Trigger" build number 277
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7699174909515383426.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39859_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 00:58:06,894 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:58:06,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 00:58:06,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:58:06,897 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:58:06,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:58:06,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:58:06,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:58:06,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:58:06,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:58:06,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:58:06,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:58:06,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:58:07,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:58:07,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:58:07,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:58:07,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:58:07,082 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:58:07,083 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:58:07,083 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:58:07,083 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:58:07,083 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 00:58:07,084 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 00:58:07,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-12 00:58:07,092] [main] java.version = 11.0.16
[testng] 00:58:07,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:58:07,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:07,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-12_00-58-07.log]
[testng] 00:58:07,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-12 00:58:07,138] [main] testng.directory = /data
[testng] [2024-11-12 00:58:07,138] [main] testng.configDirectory = /config
[testng] [2024-11-12 00:58:07,147] [main] testng.multiplier = 1.0
[testng] [2024-11-12 00:58:07,148] [main] testng.in-memory = false
[testng] [2024-11-12 00:58:07,148] [main] testng.allow-missing = false
[testng] [2024-11-12 00:58:07,148] [main] user.language = en
[testng] [2024-11-12 00:58:07,148] [main] user.country = ${user.country}
[testng] [2024-11-12 00:58:07,148] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-12 00:58:08,035] [main] ----------------------------------------
[testng] [2024-11-12 00:58:08,036] [main] Total files: 25
[testng] [2024-11-12 00:58:08,036] [main] Scan time: 0.887 s (35 ms/file)
[testng] [2024-11-12 00:58:08,036] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-12 00:58:13,489] [pool-1-thread-1] Initializing /data/brian/images/TRU256.PCT:
[testng] 00:58:13,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:58:13,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:13,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-12_00-58-13.log]
[testng] 00:58:13,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bc1fa88 - End of configuration.
[testng] [2024-11-12 00:58:13,813] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] 00:58:13,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:58:13,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:13,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-12_00-58-13.log]
[testng] 00:58:13,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35f8188a - End of configuration.
[testng] [2024-11-12 00:58:14,025] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT:
[testng] 00:58:14,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:58:14,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:14,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-12_00-58-14.log]
[testng] 00:58:14,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40803d0c - End of configuration.
[testng] [2024-11-12 00:58:14,133] [pool-1-thread-10] Initializing /data/misc/swlogo.pict:
[testng] 00:58:14,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:58:14,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:14,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-12_00-58-14.log]
[testng] 00:58:14,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bb8fc17 - End of configuration.
[testng] [2024-11-12 00:58:14,325] [pool-1-thread-9] Initializing /data/brian/images/FLAG_B32.pct:
[testng] 00:58:14,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:58:14,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:14,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-12_00-58-14.log]
[testng] 00:58:14,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@142181c8 - End of configuration.
[testng] [2024-11-12 00:58:14,652] [pool-1-thread-8] Initializing /data/misc/planet.png:
[testng] 00:58:14,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:58:14,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:14,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-12_00-58-14.log]
[testng] 00:58:14,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37c7e6ef - End of configuration.
[testng] [2024-11-12 00:58:14,695] [pool-1-thread-7] Initializing /data/jqd/sixteenBit.pict:
[testng] 00:58:14,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:58:14,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:14,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-12_00-58-14.log]
[testng] 00:58:14,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2af77d17 - End of configuration.
[testng] [2024-11-12 00:58:15,008] [pool-1-thread-6] Initializing /data/jqd/mire32.pict:
[testng] 00:58:15,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:58:15,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:15,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-12_00-58-15.log]
[testng] 00:58:15,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65f17f60 - End of configuration.
[testng] [2024-11-12 00:58:15,321] [pool-1-thread-5] Initializing /data/jqd/mireSixteen.pict:
[testng] 00:58:15,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:58:15,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:15,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-12_00-58-15.log]
[testng] 00:58:15,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a89bd66 - End of configuration.
[testng] [2024-11-12 00:58:15,612] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT:
[testng] 00:58:15,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:58:15,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:15,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-12_00-58-15.log]
[testng] 00:58:15,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25d6fc1b - End of configuration.
[testng] [2024-11-12 00:58:15,920] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] 00:58:15,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:58:15,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:15,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-12_00-58-15.log]
[testng] 00:58:15,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13222ddf - End of configuration.
[testng] [2024-11-12 00:58:16,344] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] 00:58:16,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:58:16,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:16,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-12_00-58-16.log]
[testng] 00:58:16,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3915a9cc - End of configuration.
[testng] [2024-11-12 00:58:19,017] [pool-1-thread-8] Initializing /data/misc/planet2.pict:
[testng] [2024-11-12 00:58:19,920] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] [2024-11-12 00:58:20,471] [pool-1-thread-1] Initializing /data/brian/images/BLU.PCT:
[testng] [2024-11-12 00:58:20,602] [pool-1-thread-9] Initializing /data/jqd/32bit.pict:
[testng] [2024-11-12 00:58:20,747] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2024-11-12 00:58:20,875] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2024-11-12 00:58:21,007] [pool-1-thread-7] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] [2024-11-12 00:58:21,145] [pool-1-thread-5] Initializing /data/wayne/PotatoMeristem.pict:
[testng] [2024-11-12 00:58:21,305] [pool-1-thread-4] Initializing /data/brian/images/GRN.PCT:
[testng] [2024-11-12 00:58:21,428] [pool-1-thread-11] Initializing /data/brian/images/BLK.PCT:
[testng] [2024-11-12 00:58:22,018] [pool-1-thread-3] Initializing /data/misc/planet.pict:
[testng] [2024-11-12 00:58:22,356] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT:
[testng] [2024-11-12 00:58:24,134] [pool-1-thread-8] Initializing /data/brian/images/VENUS.pct:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 22 seconds
Finished: SUCCESS