Started by upstream project "BIOFORMATS-test-repo" build number 253
originally caused by:
Started by upstream project "Trigger" build number 277
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins8183448064399588359.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39894_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:05:27,585 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:05:27,587 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 02:05:27,587 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:05:27,588 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:05:27,588 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:05:27,589 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:05:27,589 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:05:27,589 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:05:27,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:05:27,590 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:05:27,590 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:05:27,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:05:27,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:05:27,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:05:27,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:05:27,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:05:27,794 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:05:27,794 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:05:27,794 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:05:27,795 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:05:27,795 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 02:05:27,796 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 02:05:27,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 206 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-12 02:05:27,805] [main] java.version = 11.0.16
[testng] 02:05:27,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:05:27,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:27,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-12_02-05-27.log]
[testng] 02:05:27,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-12 02:05:27,860] [main] testng.directory = /data
[testng] [2024-11-12 02:05:27,860] [main] testng.configDirectory = /config
[testng] [2024-11-12 02:05:27,870] [main] testng.multiplier = 1.0
[testng] [2024-11-12 02:05:27,872] [main] testng.in-memory = false
[testng] [2024-11-12 02:05:27,872] [main] testng.allow-missing = false
[testng] [2024-11-12 02:05:27,872] [main] user.language = en
[testng] [2024-11-12 02:05:27,872] [main] user.country = ${user.country}
[testng] [2024-11-12 02:05:27,872] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-12 02:05:34,824] [main] ----------------------------------------
[testng] [2024-11-12 02:05:34,824] [main] Total files: 40
[testng] [2024-11-12 02:05:34,824] [main] Scan time: 6.952 s (173 ms/file)
[testng] [2024-11-12 02:05:34,824] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 38 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-12 02:06:25,598] [pool-1-thread-1] Initializing /data/curtis/mri-stack-bf.avi:
[testng] 02:06:25,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:06:25,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:25,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-12_02-06-25.log]
[testng] 02:06:25,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ee02b69 - End of configuration.
[testng] [2024-11-12 02:06:25,914] [pool-1-thread-12] Initializing /data/sample-avis/extra-chunk/HyperStack.avi:
[testng] 02:06:25,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:06:25,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:25,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-12_02-06-25.log]
[testng] 02:06:25,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dfaa2f1 - End of configuration.
[testng] [2024-11-12 02:06:26,217] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi:
[testng] 02:06:26,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:06:26,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:26,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-12_02-06-26.log]
[testng] 02:06:26,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19228e33 - End of configuration.
[testng] [2024-11-12 02:06:26,532] [pool-1-thread-10] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi:
[testng] 02:06:26,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:06:26,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:26,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-12_02-06-26.log]
[testng] 02:06:26,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54f61534 - End of configuration.
[testng] [2024-11-12 02:06:26,838] [pool-1-thread-9] Initializing /data/simon/24_bit_problem.avi:
[testng] 02:06:26,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:06:26,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:26,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-12_02-06-26.log]
[testng] 02:06:26,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b36c67e - End of configuration.
[testng] [2024-11-12 02:06:27,162] [pool-1-thread-8] Initializing /data/qa-11011/M-flow10001.avi:
[testng] 02:06:27,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:06:27,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:27,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-12_02-06-27.log]
[testng] 02:06:27,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a60a5a1 - End of configuration.
[testng] [2024-11-12 02:06:27,540] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi:
[testng] 02:06:27,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:06:27,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:27,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-12_02-06-27.log]
[testng] 02:06:27,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6198d76c - End of configuration.
[testng] [2024-11-12 02:06:27,864] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie 3.avi:
[testng] 02:06:27,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:06:27,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:27,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-12_02-06-27.log]
[testng] 02:06:27,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32a3c3b9 - End of configuration.
[testng] [2024-11-12 02:06:28,186] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi:
[testng] 02:06:28,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:06:28,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:28,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-12_02-06-28.log]
[testng] 02:06:28,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fce6f7e - End of configuration.
[testng] [2024-11-12 02:06:28,501] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie.avi:
[testng] 02:06:28,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:06:28,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:28,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-12_02-06-28.log]
[testng] 02:06:28,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71803b3 - End of configuration.
[testng] [2024-11-12 02:06:28,840] [pool-1-thread-3] Initializing /data/curtis/mri-stack-ij-new.avi:
[testng] 02:06:28,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:06:28,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:28,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-12_02-06-28.log]
[testng] 02:06:28,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@239caf69 - End of configuration.
[testng] [2024-11-12 02:06:29,169] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI:
[testng] 02:06:29,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:06:29,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:29,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-12_02-06-29.log]
[testng] 02:06:29,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@397fad99 - End of configuration.
[testng] [2024-11-12 02:06:33,429] [pool-1-thread-12] Initializing /data/prairie/cornea dc and macs.AVI:
[testng] [2024-11-12 02:06:34,061] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-old.avi:
[testng] [2024-11-12 02:06:34,392] [pool-1-thread-7] Initializing /data/chris/APZ04_009.avi:
[testng] [2024-11-12 02:06:35,552] [pool-1-thread-3] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi:
[testng] [2024-11-12 02:06:35,863] [pool-1-thread-1] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi:
[testng] [2024-11-12 02:06:36,459] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi:
[testng] [2024-11-12 02:06:36,764] [pool-1-thread-2] Initializing /data/william/worm.avi:
[testng] [2024-11-12 02:06:37,061] [pool-1-thread-10] Initializing /data/roger/spheroid1.lsm movie.avi:
[testng] [2024-11-12 02:06:37,389] [pool-1-thread-6] Initializing /data/jae/20xD_5minfor14h.avi:
[testng] [2024-11-12 02:06:37,769] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi:
[testng] [2024-11-12 02:06:38,096] [pool-1-thread-8] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi:
[testng] [2024-11-12 02:06:38,390] [pool-1-thread-9] Initializing /data/kurt/63x_6um.avi:
[testng] [2024-11-12 02:06:42,108] [pool-1-thread-5] Initializing /data/chip_avi/Level004-WA-116.avi:
[testng] [2024-11-12 02:06:42,479] [pool-1-thread-2] Initializing /data/kurt/40x_6um_2.avi:
[testng] [2024-11-12 02:06:42,902] [pool-1-thread-11] Initializing /data/qa-5019/nemo-2_10_20.avi:
[testng] [2024-11-12 02:06:43,215] [pool-1-thread-3] Initializing /data/qa-5019/nemo-2_1_.avi:
[testng] [2024-11-12 02:06:43,523] [pool-1-thread-12] Initializing /data/chip_avi/Level003-DB-089.avi:
[testng] [2024-11-12 02:06:43,799] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie 2.avi:
[testng] [2024-11-12 02:06:44,092] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi:
[testng] [2024-11-12 02:06:44,387] [pool-1-thread-4] Initializing /data/roger/op9middle40x.lsm movie.avi:
[testng] [2024-11-12 02:06:44,720] [pool-1-thread-9] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi:
[testng] [2024-11-12 02:06:44,999] [pool-1-thread-6] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi:
[testng] [2024-11-12 02:06:49,053] [pool-1-thread-1] Initializing /data/ascb/TIRF.avi:
[testng] [2024-11-12 02:06:49,929] [pool-1-thread-9] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi:
[testng] [2024-11-12 02:06:50,294] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 4.avi:
[testng] [2024-11-12 02:06:50,690] [pool-1-thread-12] Initializing /data/kurt/40x_6um.avi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 2014, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 33 seconds
Finished: SUCCESS