Started by upstream project "BIOFORMATS-test-repo" build number 30
originally caused by:
Started by upstream project "Trigger" build number 33
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins13361441337882388796.sh
+ '[' sis = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3990_merge_ci -v /uod/idr/repos/curated/sis:/data -v /uod/idr-scratch/merge-ci/curated/sis:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:52:39,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:52:39,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:52:39,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:52:39,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:52:39,378 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:52:39,379 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:52:39,379 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:52:39,380 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:52:39,380 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@428640fa - End of configuration.
[testng] 01:52:39,382 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6bd61f98 - Registering current configuration as safe fallback point
[testng] 01:52:39,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48aca48b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 682 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-11 01:52:39,404] [main] java.version = 21
[testng] 01:52:39,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:52:39,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:39,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-11_01-52-39.log]
[testng] 01:52:39,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-04-11 01:52:39,619] [main] testng.directory = /data
[testng] [2024-04-11 01:52:39,620] [main] testng.configDirectory = /config
[testng] [2024-04-11 01:52:39,703] [main] testng.multiplier = 1.0
[testng] [2024-04-11 01:52:39,705] [main] testng.in-memory = false
[testng] [2024-04-11 01:52:39,706] [main] testng.allow-missing = false
[testng] [2024-04-11 01:52:39,706] [main] user.language = en
[testng] [2024-04-11 01:52:39,706] [main] user.country = ${user.country}
[testng] [2024-04-11 01:52:39,706] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-11 01:52:41,111] [main] ----------------------------------------
[testng] [2024-04-11 01:52:41,112] [main] Total files: 13
[testng] [2024-04-11 01:52:41,112] [main] Scan time: 1.405 s (108 ms/file)
[testng] [2024-04-11 01:52:41,113] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-11 01:52:43,461] [pool-1-thread-1] Initializing /data/strand/FS44-1-254.tif:
[testng] 01:52:43,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:52:43,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:43,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-11_01-52-43.log]
[testng] 01:52:43,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eb32e82 - End of configuration.
[testng] [2024-04-11 01:52:43,720] [pool-1-thread-11] Initializing /data/glen/CG 3.31 10K.tif:
[testng] 01:52:43,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:52:43,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:43,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-11_01-52-43.log]
[testng] 01:52:43,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@266e64f7 - End of configuration.
[testng] [2024-04-11 01:52:43,853] [pool-1-thread-10] Initializing /data/glen/L1500k P_4_7500X.tif:
[testng] 01:52:43,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:52:43,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:43,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-11_01-52-43.log]
[testng] 01:52:43,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61c670ec - End of configuration.
[testng] [2024-04-11 01:52:43,947] [pool-1-thread-9] Initializing /data/pki/Tv2.tif:
[testng] 01:52:43,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:52:43,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:43,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-11_01-52-43.log]
[testng] 01:52:43,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c407605 - End of configuration.
[testng] [2024-04-11 01:52:44,129] [pool-1-thread-8] Initializing /data/glen/L1500k P_3_7500X.tif:
[testng] 01:52:44,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:52:44,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:44,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-11_01-52-44.log]
[testng] 01:52:44,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b894ba5 - End of configuration.
[testng] [2024-04-11 01:52:44,240] [pool-1-thread-7] Initializing /data/strand/MIA.tif:
[testng] 01:52:44,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:52:44,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:44,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-11_01-52-44.log]
[testng] 01:52:44,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e5b4840 - End of configuration.
[testng] [2024-04-11 01:52:44,429] [pool-1-thread-6] Initializing /data/glen/CG 3.31 15K.tif:
[testng] 01:52:44,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:52:44,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:44,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-11_01-52-44.log]
[testng] 01:52:44,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f3ad316 - End of configuration.
[testng] [2024-04-11 01:52:44,685] [pool-1-thread-5] Initializing /data/dimitri/ELN-ARM_00049_38.tif:
[testng] 01:52:44,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:52:44,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:44,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-11_01-52-44.log]
[testng] 01:52:44,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4380f286 - End of configuration.
[testng] [2024-04-11 01:52:44,833] [pool-1-thread-4] Initializing /data/russell/Arbacia 2week ADL.tif:
[testng] 01:52:44,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:52:44,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:44,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-11_01-52-44.log]
[testng] 01:52:44,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c9d9c46 - End of configuration.
[testng] [2024-04-11 01:52:44,996] [pool-1-thread-3] Initializing /data/glen/L1468a-2_4_15000X.tif:
[testng] 01:52:44,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:52:44,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:44,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-11_01-52-44.log]
[testng] 01:52:44,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77ebe3f8 - End of configuration.
[testng] [2024-04-11 01:52:45,188] [pool-1-thread-2] Initializing /data/glen/CG 3.31 20K.tif:
[testng] 01:52:45,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:52:45,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:45,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-11_01-52-45.log]
[testng] 01:52:45,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d9bb08 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 28 seconds
Finished: SUCCESS