Started by upstream project "BIOFORMATS-test-repo" build number 253
originally caused by:
 Started by upstream project "Trigger" build number 277
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins16946091964360011062.sh
+ '[' nifti = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39957_merge_ci -v /uod/idr/repos/curated/nifti:/data -v /uod/idr-scratch/merge-ci/curated/nifti:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 05:20:36,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 05:20:36,789 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 05:20:36,789 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:20:36,790 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:20:36,790 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 05:20:36,791 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 05:20:36,791 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 05:20:36,791 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:20:36,792 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:20:36,792 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 05:20:36,792 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 05:20:36,793 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 05:20:36,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 05:20:36,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 05:20:36,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 05:20:36,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 05:20:36,987 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 05:20:36,987 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 05:20:36,987 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 05:20:36,987 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 05:20:36,987 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 05:20:36,988 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 05:20:36,988 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-12 05:20:36,997] [main] java.version = 11.0.16
   [testng] 05:20:37,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 05:20:37,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:20:37,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-12_05-20-37.log]
   [testng] 05:20:37,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-11-12 05:20:37,044] [main] testng.directory = /data
   [testng] [2024-11-12 05:20:37,044] [main] testng.configDirectory = /config
   [testng] [2024-11-12 05:20:37,053] [main] testng.multiplier = 1.0
   [testng] [2024-11-12 05:20:37,054] [main] testng.in-memory = false
   [testng] [2024-11-12 05:20:37,055] [main] testng.allow-missing = false
   [testng] [2024-11-12 05:20:37,055] [main] user.language = en
   [testng] [2024-11-12 05:20:37,055] [main] user.country = ${user.country}
   [testng] [2024-11-12 05:20:37,055] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-12 05:21:01,471] [main] ----------------------------------------
   [testng] [2024-11-12 05:21:01,471] [main] Total files: 23
   [testng] [2024-11-12 05:21:01,472] [main] Scan time: 24.416 s (1061 ms/file)
   [testng] [2024-11-12 05:21:01,472] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-12 05:22:02,509] [pool-1-thread-1] Initializing /data/public/NIH/avg152T1_LR_nifti.hdr: 
   [testng] 05:22:02,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 05:22:02,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:22:02,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-12_05-22-02.log]
   [testng] 05:22:02,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a6f523e - End of configuration.
   [testng] [2024-11-12 05:22:03,851] [pool-1-thread-12] Initializing /data/public/NIH/avg152T1_LR_nifti.nii.gz: 
   [testng] 05:22:03,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 05:22:03,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:22:03,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-12_05-22-03.log]
   [testng] 05:22:03,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3710da - End of configuration.
   [testng] [2024-11-12 05:22:09,754] [pool-1-thread-11] Initializing /data/qa-17334/volume4d.nii: 
   [testng] 05:22:09,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 05:22:09,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:22:09,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-12_05-22-09.log]
   [testng] 05:22:09,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32b64b98 - End of configuration.
   [testng] [2024-11-12 05:22:11,074] [pool-1-thread-10] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_94.hdr: 
   [testng] 05:22:11,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 05:22:11,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:22:11,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-12_05-22-11.log]
   [testng] 05:22:11,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51502948 - End of configuration.
   [testng] [2024-11-12 05:22:12,278] [pool-1-thread-9] Initializing /data/public/NIH/filtered_func_data.nii: 
   [testng] 05:22:12,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 05:22:12,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:22:12,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-12_05-22-12.log]
   [testng] 05:22:12,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b051f6a - End of configuration.
   [testng] [2024-11-12 05:22:13,502] [pool-1-thread-8] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr: 
   [testng] 05:22:13,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 05:22:13,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:22:13,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-12_05-22-13.log]
   [testng] 05:22:13,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@518186a1 - End of configuration.
   [testng] [2024-11-12 05:22:14,937] [pool-1-thread-7] Initializing /data/public/NIH/zstat1.nii.gz: 
   [testng] 05:22:14,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 05:22:14,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:22:14,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-12_05-22-14.log]
   [testng] 05:22:14,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15834e9a - End of configuration.
   [testng] [2024-11-12 05:22:20,682] [pool-1-thread-6] Initializing /data/public/NIH/avg152T1_RL_nifti.hdr: 
   [testng] 05:22:20,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 05:22:20,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:22:20,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-12_05-22-20.log]
   [testng] 05:22:20,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15d6e7a2 - End of configuration.
   [testng] [2024-11-12 05:22:22,045] [pool-1-thread-5] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_27_conf_86.hdr: 
   [testng] 05:22:22,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 05:22:22,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:22:22,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-12_05-22-22.log]
   [testng] 05:22:22,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79ccf629 - End of configuration.
   [testng] [2024-11-12 05:22:23,339] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_RL_nifti.nii: 
   [testng] 05:22:23,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 05:22:23,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:22:23,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-12_05-22-23.log]
   [testng] 05:22:23,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46e473af - End of configuration.
   [testng] [2024-11-12 05:22:24,543] [pool-1-thread-3] Initializing /data/public/NIH/newsirp_final_XML.nii: 
   [testng] 05:22:24,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 05:22:24,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:22:24,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-12_05-22-24.log]
   [testng] 05:22:24,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66ffc635 - End of configuration.
   [testng] [2024-11-12 05:22:25,965] [pool-1-thread-2] Initializing /data/public/NIH/minimal.nii: 
   [testng] 05:22:25,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 05:22:25,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:22:25,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-12_05-22-25.log]
   [testng] 05:22:25,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bf1d6ac - End of configuration.
   [testng] [2024-11-12 05:22:37,078] [pool-1-thread-2] Initializing /data/public/NIH/minimal.hdr: 
   [testng] [2024-11-12 05:22:38,452] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_LR_nifti.nii: 
   [testng] [2024-11-12 05:22:39,838] [pool-1-thread-11] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_94.hdr: 
   [testng] [2024-11-12 05:22:41,270] [pool-1-thread-3] Initializing /data/public/NIH/avg152T1_RL_nifti.nii.gz: 
   [testng] [2024-11-12 05:22:46,753] [pool-1-thread-9] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_26_conf_91.hdr: 
   [testng] [2024-11-12 05:22:51,852] [pool-1-thread-5] Initializing /data/public/NIH/filtered_func_data.nii.gz: 
   [testng] [2024-11-12 05:22:59,709] [pool-1-thread-10] Initializing /data/public/NIH/zstat1.nii: 
   [testng] [2024-11-12 05:23:01,052] [pool-1-thread-6] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_100.hdr: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 3 minutes 27 seconds
Finished: SUCCESS