Started by upstream project "BIOFORMATS-test-repo" build number 254
originally caused by:
Started by upstream project "Trigger" build number 278
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins2637755782151266798.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39983_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:21:48,911 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:21:48,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:21:48,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:21:48,913 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:21:48,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:21:48,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:21:48,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:21:48,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:21:48,915 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:21:48,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:21:48,916 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:21:48,916 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:21:49,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:21:49,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:21:49,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:21:49,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:21:49,179 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:21:49,179 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:21:49,179 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:21:49,180 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:21:49,180 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:21:49,181 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:21:49,181 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 266 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-13 00:21:49,195] [main] java.version = 17.0.2
[testng] 00:21:49,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:21:49,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:49,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-13_00-21-49.log]
[testng] 00:21:49,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-11-13 00:21:49,263] [main] testng.directory = /data
[testng] [2024-11-13 00:21:49,263] [main] testng.configDirectory = /config
[testng] [2024-11-13 00:21:49,277] [main] testng.multiplier = 1.0
[testng] [2024-11-13 00:21:49,278] [main] testng.in-memory = false
[testng] [2024-11-13 00:21:49,278] [main] testng.allow-missing = false
[testng] [2024-11-13 00:21:49,278] [main] user.language = en
[testng] [2024-11-13 00:21:49,278] [main] user.country = ${user.country}
[testng] [2024-11-13 00:21:49,279] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-13 00:22:09,035] [main] ----------------------------------------
[testng] [2024-11-13 00:22:09,035] [main] Total files: 315
[testng] [2024-11-13 00:22:09,036] [main] Scan time: 19.756 s (62 ms/file)
[testng] [2024-11-13 00:22:09,036] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 192 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-13 00:33:30,424] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] 00:33:30,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:33:30,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:30,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-13_00-33-30.log]
[testng] 00:33:30,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b877aa7 - End of configuration.
[testng] [2024-11-13 00:33:30,710] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] 00:33:30,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:33:30,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:30,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-13_00-33-30.log]
[testng] 00:33:30,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7d93c8 - End of configuration.
[testng] [2024-11-13 00:33:31,102] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.oir:
[testng] 00:33:31,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:33:31,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:31,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-13_00-33-31.log]
[testng] 00:33:31,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ff5ad66 - End of configuration.
[testng] [2024-11-13 00:33:31,658] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] 00:33:31,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:33:31,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:31,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-13_00-33-31.log]
[testng] 00:33:31,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4011570 - End of configuration.
[testng] [2024-11-13 00:33:31,971] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] 00:33:31,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:33:31,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:31,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-13_00-33-31.log]
[testng] 00:33:31,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@454c14a9 - End of configuration.
[testng] [2024-11-13 00:33:32,583] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] 00:33:32,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:33:32,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:32,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-13_00-33-32.log]
[testng] 00:33:32,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57b0aa33 - End of configuration.
[testng] [2024-11-13 00:33:33,116] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] 00:33:33,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:33:33,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:33,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-13_00-33-33.log]
[testng] 00:33:33,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61df14ff - End of configuration.
[testng] [2024-11-13 00:33:33,486] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] 00:33:33,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:33:33,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:33,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-13_00-33-33.log]
[testng] 00:33:33,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dca2a0 - End of configuration.
[testng] [2024-11-13 00:33:33,842] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] 00:33:33,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:33:33,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:33,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-13_00-33-33.log]
[testng] 00:33:33,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1344a6a4 - End of configuration.
[testng] [2024-11-13 00:33:34,267] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] 00:33:34,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:33:34,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:34,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-13_00-33-34.log]
[testng] 00:33:34,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49928bd8 - End of configuration.
[testng] [2024-11-13 00:33:34,610] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] 00:33:34,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:33:34,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:34,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-13_00-33-34.log]
[testng] 00:33:34,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36a1886f - End of configuration.
[testng] [2024-11-13 00:33:34,941] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir:
[testng] 00:33:34,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:33:34,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:34,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-13_00-33-34.log]
[testng] 00:33:34,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55c02bc4 - End of configuration.
[testng] [2024-11-13 00:34:01,349] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-11-13 00:34:01,581] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-11-13 00:34:02,276] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-11-13 00:34:03,384] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-11-13 00:34:04,184] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-11-13 00:34:04,537] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-11-13 00:34:05,007] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-11-13 00:34:05,653] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-11-13 00:34:06,454] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-11-13 00:34:10,792] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-11-13 00:34:11,945] [pool-1-thread-9] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-11-13 00:34:13,648] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-11-13 00:34:14,262] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-11-13 00:34:14,656] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-11-13 00:34:15,427] [pool-1-thread-7] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-11-13 00:34:15,761] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-11-13 00:34:16,210] [pool-1-thread-1] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-11-13 00:34:16,855] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-11-13 00:34:17,496] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-11-13 00:34:18,887] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-11-13 00:34:20,182] [pool-1-thread-5] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-11-13 00:34:21,734] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-11-13 00:34:22,914] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-11-13 00:34:24,281] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-11-13 00:34:24,697] [pool-1-thread-12] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-11-13 00:34:25,075] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-11-13 00:34:25,465] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-11-13 00:34:25,774] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-11-13 00:34:26,353] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-11-13 00:34:28,553] [pool-1-thread-4] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-11-13 00:34:29,406] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-11-13 00:34:29,612] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-11-13 00:34:30,480] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-11-13 00:34:31,680] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-11-13 00:34:32,239] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-11-13 00:34:33,658] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-11-13 00:34:34,384] [pool-1-thread-11] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-11-13 00:34:35,591] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-11-13 00:34:36,447] [pool-1-thread-6] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-11-13 00:34:41,521] [pool-1-thread-1] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-11-13 00:34:42,342] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-11-13 00:34:42,907] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-11-13 00:34:43,898] [pool-1-thread-10] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-11-13 00:34:45,320] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-11-13 00:34:48,031] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-11-13 00:34:48,682] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-11-13 00:34:49,157] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-11-13 00:34:51,951] [pool-1-thread-4] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-11-13 00:34:52,784] [pool-1-thread-1] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-11-13 00:34:53,369] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-11-13 00:34:53,828] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-11-13 00:34:54,344] [pool-1-thread-9] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-11-13 00:34:54,808] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-11-13 00:34:55,243] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-11-13 00:34:55,633] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-11-13 00:34:58,315] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-11-13 00:34:59,393] [pool-1-thread-10] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-11-13 00:35:00,089] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-11-13 00:35:00,786] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-11-13 00:35:01,500] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-11-13 00:35:02,132] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-11-13 00:35:02,614] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-11-13 00:35:03,407] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-11-13 00:35:04,314] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-11-13 00:35:05,356] [pool-1-thread-8] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-11-13 00:35:06,515] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-11-13 00:35:07,850] [pool-1-thread-11] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-11-13 00:35:08,650] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-11-13 00:35:09,275] [pool-1-thread-12] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-11-13 00:35:09,863] [pool-1-thread-9] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-11-13 00:35:10,463] [pool-1-thread-6] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-11-13 00:35:11,476] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-11-13 00:35:13,550] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-11-13 00:35:14,600] [pool-1-thread-4] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-11-13 00:35:15,547] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-11-13 00:35:15,921] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-11-13 00:35:17,082] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-11-13 00:35:18,418] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-11-13 00:35:18,931] [pool-1-thread-8] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-11-13 00:35:20,235] [pool-1-thread-4] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-11-13 00:35:20,492] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-11-13 00:35:21,144] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-11-13 00:35:24,803] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-11-13 00:35:26,239] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-11-13 00:35:27,195] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-11-13 00:35:27,813] [pool-1-thread-5] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-11-13 00:35:28,307] [pool-1-thread-7] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-11-13 00:35:29,702] [pool-1-thread-6] Initializing /data/qa-17270/image1.oir:
[testng] [2024-11-13 00:35:30,015] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-11-13 00:35:31,368] [pool-1-thread-11] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-11-13 00:35:33,525] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-11-13 00:35:36,517] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-11-13 00:35:37,833] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-11-13 00:35:39,106] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-11-13 00:35:39,582] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-11-13 00:35:41,287] [pool-1-thread-9] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-11-13 00:35:42,680] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-11-13 00:35:43,693] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-11-13 00:35:44,223] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-11-13 00:35:45,122] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-11-13 00:35:46,647] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-11-13 00:35:46,976] [pool-1-thread-10] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-11-13 00:35:47,889] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-11-13 00:35:49,323] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2024-11-13 00:35:50,602] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-11-13 00:35:51,485] [pool-1-thread-10] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-11-13 00:36:43,830] [pool-1-thread-11] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-11-13 00:36:44,387] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-11-13 00:36:44,785] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-11-13 00:36:45,334] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-11-13 00:36:46,618] [pool-1-thread-8] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-11-13 00:36:49,756] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-11-13 00:36:50,326] [pool-1-thread-11] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-11-13 00:36:52,449] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-11-13 00:36:53,618] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-11-13 00:36:55,541] [pool-1-thread-12] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-11-13 00:36:59,877] [pool-1-thread-7] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-11-13 00:37:19,963] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-11-13 00:37:21,427] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-11-13 00:37:23,768] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-11-13 00:37:25,292] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-11-13 00:37:28,473] [pool-1-thread-11] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-11-13 00:37:33,148] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-11-13 00:37:36,157] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-11-13 00:37:40,669] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-11-13 00:37:43,039] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-11-13 00:37:44,347] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-11-13 00:37:48,397] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-11-13 00:37:49,010] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-11-13 00:37:49,935] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-11-13 00:37:50,973] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-11-13 00:37:55,192] [pool-1-thread-9] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-11-13 00:37:56,998] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-11-13 00:37:58,323] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-11-13 00:38:00,622] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-11-13 00:38:03,199] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-11-13 00:38:09,287] [pool-1-thread-12] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-11-13 00:38:11,172] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-11-13 00:38:12,441] [pool-1-thread-4] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-11-13 00:38:13,543] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-11-13 00:38:20,379] [pool-1-thread-6] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-11-13 00:38:21,445] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-11-13 00:38:22,131] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-11-13 00:38:22,736] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-11-13 00:38:26,321] [pool-1-thread-6] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-11-13 00:38:28,813] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-11-13 00:38:31,108] [pool-1-thread-11] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-11-13 00:38:37,534] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-11-13 00:38:39,245] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-11-13 00:38:41,293] [pool-1-thread-4] Initializing /data/olympus/XYZt.oir:
[testng] [2024-11-13 00:38:43,179] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-11-13 00:38:46,957] [pool-1-thread-2] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-11-13 00:38:48,004] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-11-13 00:38:52,019] [pool-1-thread-9] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-11-13 00:38:53,927] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-11-13 00:38:59,141] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-11-13 00:39:03,319] [pool-1-thread-2] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-11-13 00:39:33,970] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-11-13 00:39:35,566] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-11-13 00:39:40,283] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-11-13 00:39:43,507] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-11-13 00:39:48,569] [pool-1-thread-6] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-11-13 00:39:49,379] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-11-13 00:39:51,767] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-11-13 00:39:57,766] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-11-13 00:40:00,317] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-11-13 00:40:10,115] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-11-13 00:40:10,826] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-11-13 00:40:12,242] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-11-13 00:40:15,172] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-11-13 00:40:16,287] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-11-13 00:40:19,190] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-11-13 00:40:21,678] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-11-13 00:40:23,293] [pool-1-thread-9] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-11-13 00:40:28,456] [pool-1-thread-6] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-11-13 00:40:30,979] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-11-13 00:40:33,034] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-11-13 00:40:43,237] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-11-13 00:40:46,968] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-11-13 00:40:47,588] [pool-1-thread-6] Initializing /data/qa-17335/1.oir:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10176, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 50 minutes 11 seconds
Finished: SUCCESS