Started by upstream project "BIOFORMATS-test-repo" build number 255 originally caused by: Started by upstream project "Trigger" build number 279 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins5351021802141232364.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40221_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:43:03,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:43:03,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:43:03,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:43:03,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:43:03,013 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:43:03,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:43:03,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:43:03,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:43:03,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:43:03,015 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:43:03,015 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:43:03,016 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:43:03,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:43:03,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:43:03,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:43:03,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:43:03,199 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:43:03,199 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:43:03,199 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:43:03,199 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:43:03,199 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:43:03,200 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:43:03,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-14 01:43:03,209] [main] java.version = 21 [testng] 01:43:03,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:43:03,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:03,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-14_01-43-03.log] [testng] 01:43:03,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-14 01:43:03,255] [main] testng.directory = /data [testng] [2024-11-14 01:43:03,255] [main] testng.configDirectory = /config [testng] [2024-11-14 01:43:03,264] [main] testng.multiplier = 1.0 [testng] [2024-11-14 01:43:03,264] [main] testng.in-memory = false [testng] [2024-11-14 01:43:03,264] [main] testng.allow-missing = false [testng] [2024-11-14 01:43:03,264] [main] user.language = en [testng] [2024-11-14 01:43:03,265] [main] user.country = ${user.country} [testng] [2024-11-14 01:43:03,265] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-14 01:55:00,238] [main] ---------------------------------------- [testng] [2024-11-14 01:55:00,239] [main] Total files: 7329 [testng] [2024-11-14 01:55:00,239] [main] Scan time: 716.973 s (97 ms/file) [testng] [2024-11-14 01:55:00,239] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-14 02:06:44,606] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] 02:06:44,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:06:44,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:44,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-14_02-06-44.log] [testng] 02:06:44,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@214aa0ae - End of configuration. [testng] [2024-11-14 02:07:00,965] [pool-1-thread-12] Initializing /data/graham/G_Wright deconvolved.stk: [testng] 02:07:00,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:00,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:00,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-14_02-07-00.log] [testng] 02:07:00,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cf0bffb - End of configuration. [testng] [2024-11-14 02:07:02,337] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] 02:07:02,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:02,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:02,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-14_02-07-02.log] [testng] 02:07:02,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d1993b2 - End of configuration. [testng] [2024-11-14 02:07:04,154] [pool-1-thread-10] Initializing /data/aaron/metamorph.stk: [testng] 02:07:04,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:04,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:04,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-14_02-07-04.log] [testng] 02:07:04,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71bf17b1 - End of configuration. [testng] [2024-11-14 02:07:05,656] [pool-1-thread-9] Initializing /data/jae/RGB_s34.tif: [testng] 02:07:05,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:05,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:05,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-14_02-07-05.log] [testng] 02:07:05,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@530dc507 - End of configuration. [testng] [2024-11-14 02:07:07,636] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] 02:07:07,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:07,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:07,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-14_02-07-07.log] [testng] 02:07:07,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e5db8f8 - End of configuration. [testng] [2024-11-14 02:07:09,488] [pool-1-thread-7] Initializing /data/samples/zserEight.stk: [testng] 02:07:09,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:09,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:09,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-14_02-07-09.log] [testng] 02:07:09,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@793df9ed - End of configuration. [testng] [2024-11-14 02:07:10,828] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] 02:07:10,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:10,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:10,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-14_02-07-10.log] [testng] 02:07:10,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b96df36 - End of configuration. [testng] [2024-11-14 02:07:11,049] [pool-1-thread-5] Initializing /data/thomas/t_test2001.tif: [testng] 02:07:11,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:11,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:11,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-14_02-07-11.log] [testng] 02:07:11,051 |-INFO in ch.qos.logback.core.sift.SiftProcessor@251b4fed - End of configuration. [testng] [2024-11-14 02:07:12,232] [pool-1-thread-4] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 02:07:12,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:12,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:12,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-14_02-07-12.log] [testng] 02:07:12,234 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d2a507e - End of configuration. [testng] [2024-11-14 02:07:13,688] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] 02:07:13,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:13,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:13,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-14_02-07-13.log] [testng] 02:07:13,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9d5a094 - End of configuration. [testng] [2024-11-14 02:07:15,200] [pool-1-thread-3] Used files list does not include base file [testng] [2024-11-14 02:07:15,202] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] 02:07:15,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:15,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:15,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-14_02-07-15.log] [testng] 02:07:15,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c9b2384 - End of configuration. [testng] [2024-11-14 02:07:23,097] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-11-14 02:07:27,594] [pool-1-thread-7] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-11-14 02:07:29,936] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-11-14 02:07:31,413] [pool-1-thread-12] Used files list does not include base file [testng] [2024-11-14 02:07:31,415] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-11-14 02:07:32,962] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-11-14 02:07:35,085] [pool-1-thread-5] Used files list does not include base file [testng] [2024-11-14 02:07:35,086] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-11-14 02:07:36,477] [pool-1-thread-10] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-11-14 02:07:37,647] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-11-14 02:07:44,197] [pool-1-thread-3] Initializing /data/david/tl4.tif: [testng] [2024-11-14 02:07:47,369] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-11-14 02:07:51,114] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-11-14 02:07:54,746] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-11-14 02:07:57,035] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-11-14 02:07:58,967] [pool-1-thread-7] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-11-14 02:08:01,694] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-11-14 02:08:10,973] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-11-14 02:08:22,940] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-11-14 02:08:24,940] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-11-14 02:08:27,445] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-11-14 02:08:30,311] [pool-1-thread-8] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-11-14 02:08:33,098] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-14 02:08:35,991] [pool-1-thread-4] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-11-14 02:08:38,880] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-11-14 02:08:40,326] [pool-1-thread-6] Used files list does not include base file [testng] [2024-11-14 02:08:41,274] [pool-1-thread-10] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-11-14 02:08:43,404] [pool-1-thread-3] Initializing /data/jerome/deconv.STK: [testng] [2024-11-14 02:08:48,090] [pool-1-thread-8] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-11-14 02:08:51,597] [pool-1-thread-4] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-11-14 02:08:54,881] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-11-14 02:08:57,663] [pool-1-thread-7] Used files list does not include base file [testng] [2024-11-14 02:08:58,865] [pool-1-thread-3] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-11-14 02:09:08,282] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-11-14 02:09:10,333] [pool-1-thread-6] Initializing /data/qa-16915/m-01.tif: [testng] [2024-11-14 02:09:12,205] [pool-1-thread-4] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-11-14 02:09:13,936] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-11-14 02:09:16,331] [pool-1-thread-5] Used files list does not include base file [testng] [2024-11-14 02:09:19,451] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-11-14 02:09:20,990] [pool-1-thread-3] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-11-14 02:09:23,829] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-14 02:09:25,763] [pool-1-thread-10] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-11-14 02:09:28,618] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-14 02:09:30,657] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-11-14 02:09:32,128] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-11-14 02:09:38,634] [pool-1-thread-3] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-11-14 02:09:40,606] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-11-14 02:09:42,391] [pool-1-thread-1] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-11-14 02:09:49,888] [pool-1-thread-12] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-11-14 02:09:56,781] [pool-1-thread-4] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-11-14 02:10:00,402] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-11-14 02:10:05,212] [pool-1-thread-8] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-11-14 02:10:15,270] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-11-14 02:10:16,835] [pool-1-thread-6] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-11-14 02:10:18,381] [pool-1-thread-11] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-11-14 02:10:45,358] [pool-1-thread-3] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-11-14 02:10:47,331] [pool-1-thread-12] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-11-14 02:10:53,602] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-11-14 02:10:55,726] [pool-1-thread-4] Used files list does not include base file [testng] [2024-11-14 02:10:55,728] [pool-1-thread-5] Initializing /data/josh/2101to800.stk: [testng] [2024-11-14 02:11:03,815] [pool-1-thread-7] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-11-14 02:11:09,189] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-11-14 02:11:12,361] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-11-14 02:11:14,788] [pool-1-thread-8] Used files list does not include base file [testng] [2024-11-14 02:11:16,587] [pool-1-thread-7] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-11-14 02:11:17,978] [pool-1-thread-3] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-11-14 02:11:19,613] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-11-14 02:11:21,102] [pool-1-thread-2] Initializing /data/thomas/test.tif: [testng] [2024-11-14 02:11:27,085] [pool-1-thread-6] Initializing 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[pool-1-thread-9] Initializing /data/josh/2101to600f.stk: [testng] [2024-11-14 02:12:55,664] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-11-14 02:13:02,441] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-14 02:13:06,232] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-11-14 02:13:07,558] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-11-14 02:13:11,596] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-14 02:13:14,029] [pool-1-thread-8] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-11-14 02:13:19,219] [pool-1-thread-10] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-11-14 02:13:25,069] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 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Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-11-14 02:14:09,059] [pool-1-thread-6] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-11-14 02:14:39,752] [pool-1-thread-10] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-11-14 02:14:55,216] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-11-14 02:14:58,113] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-11-14 02:15:00,031] [pool-1-thread-8] Used files list does not include base file [testng] [2024-11-14 02:15:01,429] [pool-1-thread-5] Initializing /data/samples/zseries.stk: [testng] [2024-11-14 02:15:10,791] [pool-1-thread-5] Initializing /data/samples/10xcalib.tif: [testng] [2024-11-14 02:15:19,183] [pool-1-thread-4] Initializing /data/samples/zserSixteen.stk: [testng] [2024-11-14 02:15:20,701] [pool-1-thread-5] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-11-14 02:15:22,198] [pool-1-thread-10] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-11-14 02:15:29,141] [pool-1-thread-4] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-11-14 02:15:32,436] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-11-14 02:15:34,435] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-11-14 02:15:36,124] [pool-1-thread-5] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-11-14 02:15:44,181] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-11-14 02:15:45,995] [pool-1-thread-2] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-11-14 02:15:50,106] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-11-14 02:15:58,505] [pool-1-thread-9] Initializing /data/qa-16915/m-02.tif: [testng] [2024-11-14 02:16:00,209] [pool-1-thread-10] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-11-14 02:16:07,740] [pool-1-thread-5] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-11-14 02:16:10,798] [pool-1-thread-8] Initializing /data/steve/Experiment2.stk: [testng] [2024-11-14 02:16:12,128] [pool-1-thread-4] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-11-14 02:16:15,132] [pool-1-thread-9] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-11-14 02:16:16,987] [pool-1-thread-4] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-11-14 02:16:21,693] [pool-1-thread-8] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-11-14 02:16:27,313] [pool-1-thread-9] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-11-14 02:16:30,309] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-11-14 02:16:32,176] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-11-14 02:16:34,560] [pool-1-thread-10] Used files list does not include base file [testng] [2024-11-14 02:16:41,289] [pool-1-thread-9] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-11-14 02:16:43,089] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-11-14 02:16:45,912] [pool-1-thread-5] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-11-14 02:16:56,064] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-11-14 02:16:57,715] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-11-14 02:17:11,331] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-11-14 02:17:16,777] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-11-14 02:17:23,277] [pool-1-thread-9] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-11-14 02:17:34,089] [pool-1-thread-9] Initializing /data/ascb/golgi marker.tif: [testng] [2024-11-14 02:17:42,217] [pool-1-thread-8] Initializing /data/samples/diatoms3d.stk: [testng] [2024-11-14 02:17:46,459] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-11-14 02:17:53,381] [pool-1-thread-8] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-11-14 02:17:56,501] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-11-14 02:17:58,096] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-14 02:18:01,706] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-11-14 02:18:09,826] [pool-1-thread-5] Initializing /data/samples/10xcalib.stk: [testng] [2024-11-14 02:18:11,409] [pool-1-thread-8] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-11-14 02:18:15,737] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-14 02:18:19,733] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-11-14 02:18:23,123] [pool-1-thread-5] Initializing /data/qa-16887/m-01.tif: [testng] [2024-11-14 02:18:28,029] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-14 02:18:29,450] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-11-14 02:18:30,820] [pool-1-thread-10] Used files list does not include base file [testng] [2024-11-14 02:18:35,010] [pool-1-thread-5] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-11-14 02:18:42,173] [pool-1-thread-4] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-11-14 02:18:50,010] [pool-1-thread-5] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-11-14 02:19:05,006] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-11-14 02:19:06,717] [pool-1-thread-6] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-11-14 02:19:12,255] [pool-1-thread-9] Initializing /data/qa-16915/m-04.tif: [testng] [2024-11-14 02:19:17,859] [pool-1-thread-10] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-11-14 02:19:19,470] [pool-1-thread-7] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-11-14 02:19:24,722] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-11-14 02:19:26,318] [pool-1-thread-9] Initializing /data/alex/Selected FITC.stk: [testng] [2024-11-14 02:19:31,160] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-11-14 02:19:37,755] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-11-14 02:19:39,859] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-11-14 02:19:41,461] [pool-1-thread-6] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-11-14 02:19:51,790] [pool-1-thread-9] Initializing /data/steve/Experiment2.tif: [testng] [2024-11-14 02:19:55,637] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-11-14 02:20:02,588] [pool-1-thread-9] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-11-14 02:20:07,715] [pool-1-thread-10] Initializing /data/ascb/mt aim.tif: [testng] [2024-11-14 02:20:15,747] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-11-14 02:20:17,434] [pool-1-thread-10] Used files list does not include base file [testng] [2024-11-14 02:20:23,955] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-11-14 02:20:36,800] [pool-1-thread-6] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-11-14 02:20:46,649] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-11-14 02:20:56,898] [pool-1-thread-10] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-11-14 02:21:07,764] [pool-1-thread-6] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-11-14 02:21:24,600] [pool-1-thread-6] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-11-14 02:21:34,468] [pool-1-thread-6] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-11-14 02:21:43,033] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-14 02:21:48,185] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-11-14 02:21:49,922] [pool-1-thread-9] Used files list does not include base file [testng] [2024-11-14 02:21:57,329] [pool-1-thread-6] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-11-14 02:22:02,450] [pool-1-thread-10] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-11-14 02:22:05,742] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-11-14 02:22:11,875] [pool-1-thread-10] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-11-14 02:22:15,184] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-11-14 02:22:33,080] [pool-1-thread-10] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-11-14 02:22:34,385] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-11-14 02:22:37,406] [pool-1-thread-2] Initializing /data/cumol-test-series/23.001: [testng] [2024-11-14 02:22:42,690] [pool-1-thread-10] Initializing /data/josh/2101to600b.stk: [testng] [2024-11-14 02:22:53,441] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-11-14 02:22:55,170] [pool-1-thread-7] Used files list does not include base file [testng] [2024-11-14 02:23:01,263] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-11-14 02:23:18,218] [pool-1-thread-9] Initializing /data/samples/zser24.stk: [testng] [2024-11-14 02:23:21,406] [pool-1-thread-2] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-11-14 02:23:27,018] [pool-1-thread-9] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-11-14 02:23:50,647] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-14 02:23:54,465] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-14 02:24:01,412] [pool-1-thread-10] Initializing /data/grant/X.STK: [testng] [2024-11-14 02:24:11,670] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-11-14 02:24:13,347] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-11-14 02:24:14,584] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-11-14 02:24:16,681] [pool-1-thread-10] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-11-14 02:24:18,767] [pool-1-thread-7] Initializing /data/josh/2101to400astk.stk: [testng] [2024-11-14 02:24:32,889] [pool-1-thread-9] Initializing /data/josh/2101to600astk.stk: [testng] [2024-11-14 02:25:02,499] [pool-1-thread-2] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-11-14 02:25:03,925] [pool-1-thread-8] Initializing /data/josh/2101to600e.stk: [testng] [2024-11-14 02:25:12,590] [pool-1-thread-6] Initializing /data/qa-30870/220209_posit5.tif: [testng] 04:19:50,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:19:50,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:50,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-14_04-19-50.log] [testng] 04:19:50,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ce781c4 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 156 minutes 52 seconds Finished: SUCCESS