Started by upstream project "BIOFORMATS-test-repo" build number 257
originally caused by:
Started by upstream project "Trigger" build number 281
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins18309297911635116179.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_40502_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 00:36:56,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:36:56,308 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 00:36:56,308 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:36:56,309 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:36:56,309 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:36:56,309 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:36:56,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:36:56,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:36:56,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:36:56,311 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:36:56,311 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:36:56,311 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:36:56,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:36:56,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:36:56,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:36:56,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:36:56,503 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:36:56,504 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:36:56,504 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:36:56,504 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:36:56,504 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 00:36:56,505 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 00:36:56,505 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-16 00:36:56,513] [main] java.version = 11.0.16
[testng] 00:36:56,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:36:56,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:56,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-16_00-36-56.log]
[testng] 00:36:56,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-16 00:36:56,562] [main] testng.directory = /data
[testng] [2024-11-16 00:36:56,562] [main] testng.configDirectory = /config
[testng] [2024-11-16 00:36:56,571] [main] testng.multiplier = 1.0
[testng] [2024-11-16 00:36:56,573] [main] testng.in-memory = false
[testng] [2024-11-16 00:36:56,573] [main] testng.allow-missing = false
[testng] [2024-11-16 00:36:56,573] [main] user.language = en
[testng] [2024-11-16 00:36:56,573] [main] user.country = ${user.country}
[testng] [2024-11-16 00:36:56,573] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-16 00:36:57,017] [main] ----------------------------------------
[testng] [2024-11-16 00:36:57,017] [main] Total files: 21
[testng] [2024-11-16 00:36:57,017] [main] Scan time: 0.444 s (21 ms/file)
[testng] [2024-11-16 00:36:57,017] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-16 00:37:04,444] [pool-1-thread-1] Initializing /data/samples/XING_T24.TGA:
[testng] 00:37:04,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:37:04,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:04,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-16_00-37-04.log]
[testng] 00:37:04,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a7fbbfc - End of configuration.
[testng] [2024-11-16 00:37:04,624] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA:
[testng] 00:37:04,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:37:04,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:04,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-16_00-37-04.log]
[testng] 00:37:04,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@434888f3 - End of configuration.
[testng] [2024-11-16 00:37:04,871] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA:
[testng] 00:37:04,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:37:04,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:04,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-16_00-37-04.log]
[testng] 00:37:04,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@284e1a4d - End of configuration.
[testng] [2024-11-16 00:37:05,180] [pool-1-thread-10] Initializing /data/samples/FLAG_T16.TGA:
[testng] 00:37:05,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:37:05,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:05,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-16_00-37-05.log]
[testng] 00:37:05,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c301d30 - End of configuration.
[testng] [2024-11-16 00:37:05,369] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA:
[testng] 00:37:05,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:37:05,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:05,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-16_00-37-05.log]
[testng] 00:37:05,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@609c2ab2 - End of configuration.
[testng] [2024-11-16 00:37:05,530] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA:
[testng] 00:37:05,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:37:05,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:05,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-16_00-37-05.log]
[testng] 00:37:05,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2487ef64 - End of configuration.
[testng] [2024-11-16 00:37:05,684] [pool-1-thread-7] Initializing /data/samples/UBW8.TGA:
[testng] 00:37:05,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:37:05,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:05,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-16_00-37-05.log]
[testng] 00:37:05,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@497c7d03 - End of configuration.
[testng] [2024-11-16 00:37:05,871] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA:
[testng] 00:37:05,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:37:05,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:05,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-16_00-37-05.log]
[testng] 00:37:05,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b07167f - End of configuration.
[testng] [2024-11-16 00:37:06,044] [pool-1-thread-5] Initializing /data/samples/XING_B24.TGA:
[testng] 00:37:06,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:37:06,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:06,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-16_00-37-06.log]
[testng] 00:37:06,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e55dd70 - End of configuration.
[testng] [2024-11-16 00:37:06,204] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA:
[testng] 00:37:06,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:37:06,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:06,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-16_00-37-06.log]
[testng] 00:37:06,206 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d477949 - End of configuration.
[testng] [2024-11-16 00:37:06,422] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA:
[testng] 00:37:06,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:37:06,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:06,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-16_00-37-06.log]
[testng] 00:37:06,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a3f62a - End of configuration.
[testng] [2024-11-16 00:37:06,627] [pool-1-thread-2] Initializing /data/samples/FLAG_B32.TGA:
[testng] 00:37:06,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:37:06,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:06,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-16_00-37-06.log]
[testng] 00:37:06,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a45b5e1 - End of configuration.
[testng] [2024-11-16 00:37:10,350] [pool-1-thread-7] Initializing /data/samples/UTC16.TGA:
[testng] [2024-11-16 00:37:10,545] [pool-1-thread-6] Initializing /data/samples/XING_B32.TGA:
[testng] [2024-11-16 00:37:10,718] [pool-1-thread-4] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2024-11-16 00:37:10,944] [pool-1-thread-2] Initializing /data/samples/UCM8.TGA:
[testng] [2024-11-16 00:37:11,112] [pool-1-thread-9] Initializing /data/samples/CBW8.TGA:
[testng] [2024-11-16 00:37:11,273] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA:
[testng] [2024-11-16 00:37:11,448] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA:
[testng] [2024-11-16 00:37:11,600] [pool-1-thread-1] Initializing /data/samples/UTC24.TGA:
[testng] [2024-11-16 00:37:11,878] [pool-1-thread-5] Initializing /data/samples/XING_T32.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 21 seconds
Finished: SUCCESS