![[Jenkins]](/jenkins/static/f6f303f9/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 258 originally caused by: Started by upstream project "Trigger" build number 282 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15686808432645945505.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40639_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:08,660 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:08,661 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:22:08,661 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:08,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:08,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:08,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:08,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:08,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:08,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:08,664 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:08,664 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:08,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:08,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:08,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:08,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:08,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:08,861 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:08,861 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:08,862 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:08,862 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:08,862 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:22:08,863 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:22:08,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-17 00:22:08,872] [main] java.version = 17.0.2 [testng] 00:22:08,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:08,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:08,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-17_00-22-08.log] [testng] 00:22:08,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-17 00:22:08,921] [main] testng.directory = /data [testng] [2024-11-17 00:22:08,921] [main] testng.configDirectory = /config [testng] [2024-11-17 00:22:08,930] [main] testng.multiplier = 1.0 [testng] [2024-11-17 00:22:08,931] [main] testng.in-memory = false [testng] [2024-11-17 00:22:08,931] [main] testng.allow-missing = false [testng] [2024-11-17 00:22:08,931] [main] user.language = en [testng] [2024-11-17 00:22:08,932] [main] user.country = ${user.country} [testng] [2024-11-17 00:22:08,932] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-17 00:22:29,496] [main] ---------------------------------------- [testng] [2024-11-17 00:22:29,496] [main] Total files: 315 [testng] [2024-11-17 00:22:29,496] [main] Scan time: 20.564 s (65 ms/file) [testng] [2024-11-17 00:22:29,496] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-17 00:32:52,164] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] 00:32:52,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:32:52,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:52,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-17_00-32-52.log] [testng] 00:32:52,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5542d0d8 - End of configuration. [testng] [2024-11-17 00:32:52,411] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] 00:32:52,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:32:52,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:52,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-17_00-32-52.log] [testng] 00:32:52,413 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29ec8071 - End of configuration. [testng] [2024-11-17 00:32:52,659] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.oir: [testng] 00:32:52,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:32:52,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:52,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-17_00-32-52.log] [testng] 00:32:52,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5331b506 - End of configuration. [testng] [2024-11-17 00:32:53,132] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] 00:32:53,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:32:53,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:53,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-17_00-32-53.log] [testng] 00:32:53,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53261467 - End of configuration. [testng] [2024-11-17 00:32:53,420] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] 00:32:53,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:32:53,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:53,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-17_00-32-53.log] [testng] 00:32:53,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14946669 - End of configuration. [testng] [2024-11-17 00:32:53,876] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] 00:32:53,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:32:53,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:53,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-17_00-32-53.log] [testng] 00:32:53,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@283d4513 - End of configuration. [testng] [2024-11-17 00:32:54,273] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] 00:32:54,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:32:54,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:54,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-17_00-32-54.log] [testng] 00:32:54,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@94ff780 - End of configuration. [testng] [2024-11-17 00:32:54,569] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] 00:32:54,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:32:54,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:54,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-17_00-32-54.log] [testng] 00:32:54,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f6325d - End of configuration. [testng] [2024-11-17 00:32:54,850] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] 00:32:54,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:32:54,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:54,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-17_00-32-54.log] [testng] 00:32:54,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3765c896 - End of configuration. [testng] [2024-11-17 00:32:55,168] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] 00:32:55,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:32:55,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:55,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-17_00-32-55.log] [testng] 00:32:55,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@204c8869 - End of configuration. [testng] [2024-11-17 00:32:55,427] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] 00:32:55,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:32:55,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:55,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-17_00-32-55.log] [testng] 00:32:55,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@358fc867 - End of configuration. [testng] [2024-11-17 00:32:55,753] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir: [testng] 00:32:55,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:32:55,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:55,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-17_00-32-55.log] [testng] 00:32:55,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba3b94c - End of configuration. [testng] [2024-11-17 00:33:22,052] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-11-17 00:33:22,510] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-11-17 00:33:23,169] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-11-17 00:33:23,745] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-11-17 00:33:24,150] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-11-17 00:33:24,436] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-11-17 00:33:24,671] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-11-17 00:33:25,014] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-11-17 00:33:25,373] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-11-17 00:33:28,780] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-11-17 00:33:29,207] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-11-17 00:33:30,374] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-11-17 00:33:30,704] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-11-17 00:33:31,013] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-11-17 00:33:31,580] [pool-1-thread-3] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-11-17 00:33:31,955] [pool-1-thread-8] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-11-17 00:33:32,226] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-11-17 00:33:32,686] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-11-17 00:33:33,008] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-11-17 00:33:34,407] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-11-17 00:33:36,449] [pool-1-thread-7] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-11-17 00:33:37,006] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-11-17 00:33:37,705] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-11-17 00:33:37,982] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-11-17 00:33:38,414] [pool-1-thread-3] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-11-17 00:33:38,791] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-11-17 00:33:39,479] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-11-17 00:33:40,140] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-11-17 00:33:43,592] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-11-17 00:33:44,121] [pool-1-thread-9] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-11-17 00:33:44,755] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-11-17 00:33:45,405] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-11-17 00:33:46,170] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-11-17 00:33:47,127] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-11-17 00:33:48,244] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-11-17 00:33:49,027] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-11-17 00:33:49,517] [pool-1-thread-12] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-11-17 00:33:50,084] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-11-17 00:33:52,139] [pool-1-thread-1] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-11-17 00:33:53,469] [pool-1-thread-9] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-11-17 00:33:54,032] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-11-17 00:33:54,470] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-11-17 00:33:55,096] [pool-1-thread-10] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-11-17 00:33:56,040] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-11-17 00:33:56,634] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-11-17 00:33:56,982] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-11-17 00:33:59,268] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-11-17 00:33:59,592] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-11-17 00:34:00,663] [pool-1-thread-9] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-11-17 00:34:01,095] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-11-17 00:34:01,568] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-11-17 00:34:02,086] [pool-1-thread-10] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-11-17 00:34:02,563] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-11-17 00:34:03,659] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-11-17 00:34:05,600] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-11-17 00:34:05,906] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-11-17 00:34:06,311] [pool-1-thread-9] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-11-17 00:34:07,721] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-11-17 00:34:07,897] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-11-17 00:34:08,316] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-11-17 00:34:08,762] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-11-17 00:34:09,899] [pool-1-thread-7] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-11-17 00:34:10,636] [pool-1-thread-1] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-11-17 00:34:11,106] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-11-17 00:34:11,611] [pool-1-thread-3] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-11-17 00:34:11,750] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-11-17 00:34:12,957] [pool-1-thread-9] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-11-17 00:34:14,291] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-11-17 00:34:14,619] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-11-17 00:34:15,029] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-11-17 00:34:15,971] [pool-1-thread-7] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-11-17 00:34:16,684] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-11-17 00:34:17,282] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-11-17 00:34:17,739] [pool-1-thread-4] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-11-17 00:34:18,749] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-11-17 00:34:19,292] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-11-17 00:34:21,562] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-11-17 00:34:23,493] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-11-17 00:34:24,394] [pool-1-thread-5] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-11-17 00:34:25,445] [pool-1-thread-3] Initializing /data/olympus/XYZt.vsi: [testng] [2024-11-17 00:34:25,687] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-11-17 00:34:26,257] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-11-17 00:34:29,764] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-11-17 00:34:30,903] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-11-17 00:34:31,272] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-11-17 00:34:32,565] [pool-1-thread-4] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-11-17 00:34:32,995] [pool-1-thread-3] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-11-17 00:34:34,760] [pool-1-thread-12] Initializing /data/qa-17270/image1.oir: [testng] [2024-11-17 00:34:35,051] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-11-17 00:34:35,571] [pool-1-thread-9] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-11-17 00:34:37,696] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-11-17 00:34:41,017] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-11-17 00:34:41,651] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-11-17 00:34:44,662] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-11-17 00:34:45,544] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-11-17 00:34:46,984] [pool-1-thread-10] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-11-17 00:34:47,938] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-11-17 00:34:48,470] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-11-17 00:34:50,438] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-11-17 00:34:51,756] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-11-17 00:34:52,297] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-11-17 00:34:53,667] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-11-17 00:34:54,792] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-11-17 00:34:55,189] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-11-17 00:34:55,556] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-11-17 00:34:57,811] [pool-1-thread-9] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-11-17 00:35:48,598] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-11-17 00:35:49,398] [pool-1-thread-8] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-11-17 00:35:50,001] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-11-17 00:35:52,853] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-11-17 00:35:54,087] [pool-1-thread-5] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-11-17 00:35:55,745] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-11-17 00:35:58,658] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-11-17 00:35:59,822] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-11-17 00:36:03,733] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-11-17 00:36:05,980] [pool-1-thread-3] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-11-17 00:36:07,009] [pool-1-thread-1] Initializing /data/qa-17919/f10187.oir: [testng] [2024-11-17 00:36:28,503] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-11-17 00:36:30,865] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-17 00:36:32,147] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-11-17 00:36:34,298] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-11-17 00:36:38,073] [pool-1-thread-6] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-11-17 00:36:41,855] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-11-17 00:36:44,774] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-11-17 00:36:49,817] [pool-1-thread-6] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-11-17 00:36:50,888] [pool-1-thread-10] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-11-17 00:36:51,634] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-11-17 00:36:57,122] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-11-17 00:36:57,616] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-11-17 00:36:58,407] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-11-17 00:36:59,659] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-11-17 00:37:05,403] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-17 00:37:06,293] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-11-17 00:37:07,994] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-11-17 00:37:09,167] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-11-17 00:37:13,447] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-11-17 00:37:17,052] [pool-1-thread-7] Initializing /data/qa-17270/stack1.oir: [testng] [2024-11-17 00:37:20,204] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-11-17 00:37:21,262] [pool-1-thread-12] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-11-17 00:37:22,423] [pool-1-thread-8] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-11-17 00:37:29,378] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-11-17 00:37:30,506] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-11-17 00:37:31,251] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-11-17 00:37:33,205] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-11-17 00:37:33,589] [pool-1-thread-10] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-11-17 00:37:35,709] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-11-17 00:37:37,657] [pool-1-thread-6] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-11-17 00:37:44,470] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-11-17 00:37:45,397] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-11-17 00:37:46,859] [pool-1-thread-8] Initializing /data/olympus/XYZt.oir: [testng] [2024-11-17 00:37:48,565] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-11-17 00:37:49,122] [pool-1-thread-10] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-11-17 00:37:51,733] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-11-17 00:37:54,700] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-11-17 00:37:56,109] [pool-1-thread-2] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-11-17 00:38:00,284] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-11-17 00:38:03,314] [pool-1-thread-5] Initializing /data/qa-17917/f10010.oir: [testng] [2024-11-17 00:38:33,371] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-11-17 00:38:38,754] [pool-1-thread-8] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-11-17 00:38:40,765] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-11-17 00:38:46,087] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-11-17 00:38:47,938] [pool-1-thread-12] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-11-17 00:38:52,208] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-11-17 00:38:55,508] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-11-17 00:39:02,360] [pool-1-thread-6] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-11-17 00:39:04,233] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-11-17 00:39:09,727] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-11-17 00:39:10,789] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-11-17 00:39:12,869] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-11-17 00:39:17,043] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-11-17 00:39:21,425] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-11-17 00:39:23,350] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-11-17 00:39:25,532] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-11-17 00:39:26,839] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-11-17 00:39:32,387] [pool-1-thread-10] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-11-17 00:39:34,573] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-11-17 00:39:35,938] [pool-1-thread-6] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-11-17 00:39:46,911] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-11-17 00:39:49,050] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-11-17 00:39:51,461] [pool-1-thread-10] Initializing /data/qa-17335/1.oir: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10176, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 48 minutes 26 seconds Finished: SUCCESS