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Started by upstream project "BIOFORMATS-test-repo" build number 258 originally caused by: Started by upstream project "Trigger" build number 282 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins6779466014166551251.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40670_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:43:54,219 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:43:54,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:43:54,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:54,221 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:54,222 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:43:54,222 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:43:54,222 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:43:54,222 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:54,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:54,223 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:43:54,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:43:54,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:43:54,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:43:54,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:43:54,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:43:54,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:43:54,438 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:43:54,438 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:43:54,438 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:43:54,438 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:43:54,438 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:43:54,439 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:43:54,439 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 216 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-17 00:43:54,449] [main] java.version = 17.0.2 [testng] 00:43:54,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:43:54,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:54,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-17_00-43-54.log] [testng] 00:43:54,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-17 00:43:54,501] [main] testng.directory = /data [testng] [2024-11-17 00:43:54,501] [main] testng.configDirectory = /config [testng] [2024-11-17 00:43:54,514] [main] testng.multiplier = 1.0 [testng] [2024-11-17 00:43:54,515] [main] testng.in-memory = false [testng] [2024-11-17 00:43:54,515] [main] testng.allow-missing = false [testng] [2024-11-17 00:43:54,515] [main] user.language = en [testng] [2024-11-17 00:43:54,515] [main] user.country = ${user.country} [testng] [2024-11-17 00:43:54,515] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-17 00:44:10,416] [main] ---------------------------------------- [testng] [2024-11-17 00:44:10,416] [main] Total files: 259 [testng] [2024-11-17 00:44:10,416] [main] Scan time: 15.901 s (61 ms/file) [testng] [2024-11-17 00:44:10,417] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-17 00:50:28,074] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 00:50:28,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:50:28,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:28,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-17_00-50-28.log] [testng] 00:50:28,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b02380 - End of configuration. [testng] [2024-11-17 00:50:38,639] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] 00:50:38,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:50:38,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:38,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-17_00-50-38.log] [testng] 00:50:38,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c6e3370 - End of configuration. [testng] [2024-11-17 00:50:38,972] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] 00:50:38,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:50:38,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:38,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-17_00-50-38.log] [testng] 00:50:38,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8364c3c - End of configuration. [testng] [2024-11-17 00:50:39,216] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] 00:50:39,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:50:39,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:39,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-17_00-50-39.log] [testng] 00:50:39,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7914afa9 - End of configuration. [testng] [2024-11-17 00:50:39,614] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] 00:50:39,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:50:39,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:39,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-17_00-50-39.log] [testng] 00:50:39,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14905b4d - End of configuration. [testng] [2024-11-17 00:50:39,789] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] 00:50:39,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:50:39,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:39,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-17_00-50-39.log] [testng] 00:50:39,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@524de17f - End of configuration. [testng] [2024-11-17 00:50:40,044] [pool-1-thread-7] Initializing /data/brian/PA-GFP-3.oib: [testng] 00:50:40,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:50:40,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:40,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-17_00-50-40.log] [testng] 00:50:40,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32f860d - End of configuration. [testng] [2024-11-17 00:50:40,449] [pool-1-thread-6] Initializing /data/stefan/cytosol_03e.oib: [testng] 00:50:40,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:50:40,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:40,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-17_00-50-40.log] [testng] 00:50:40,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67fbeca0 - End of configuration. [testng] [2024-11-17 00:50:41,150] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 00:50:41,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:50:41,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:41,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-17_00-50-41.log] [testng] 00:50:41,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a87b0b0 - End of configuration. [testng] [2024-11-17 00:50:41,550] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] 00:50:41,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:50:41,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:41,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-17_00-50-41.log] [testng] 00:50:41,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10033bd5 - End of configuration. [testng] [2024-11-17 00:50:41,869] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] 00:50:41,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:50:41,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:41,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-17_00-50-41.log] [testng] 00:50:41,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@196ae177 - End of configuration. [testng] [2024-11-17 00:50:43,239] [pool-1-thread-2] Initializing /data/glen/Null file/test no change.oif: [testng] 00:50:43,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:50:43,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:43,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-17_00-50-43.log] [testng] 00:50:43,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58fdbaaf - End of configuration. [testng] [2024-11-17 00:50:47,076] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-17 00:50:47,645] [pool-1-thread-11] Initializing /data/marc/V0606L.oib: [testng] [2024-11-17 00:50:49,192] [pool-1-thread-12] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-17 00:50:54,419] [pool-1-thread-4] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-17 00:50:54,858] [pool-1-thread-7] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-17 00:50:57,271] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-17 00:50:59,398] [pool-1-thread-4] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-17 00:51:00,312] [pool-1-thread-9] Initializing /data/glen/simulstack.oib: [testng] [2024-11-17 00:51:02,551] [pool-1-thread-6] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-17 00:51:03,694] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-17 00:51:05,248] [pool-1-thread-9] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-17 00:51:07,762] [pool-1-thread-2] Initializing /data/marc/V0606J.oib: [testng] [2024-11-17 00:51:09,320] [pool-1-thread-7] Initializing /data/glen/simulstack.oif: [testng] [2024-11-17 00:51:11,843] [pool-1-thread-9] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-11-17 00:51:12,327] [pool-1-thread-4] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-17 00:51:13,098] [pool-1-thread-11] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-17 00:51:16,296] [pool-1-thread-4] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-17 00:51:21,565] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-17 00:51:26,087] [pool-1-thread-8] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-17 00:51:28,341] [pool-1-thread-2] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-17 00:51:28,891] [pool-1-thread-8] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-17 00:51:31,445] [pool-1-thread-8] Initializing /data/allan/62909#1.oib: [testng] [2024-11-17 00:51:32,763] [pool-1-thread-9] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-17 00:51:33,106] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-17 00:51:33,993] [pool-1-thread-8] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-17 00:51:36,607] [pool-1-thread-2] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-11-17 00:51:37,151] [pool-1-thread-9] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-17 00:51:42,910] [pool-1-thread-8] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-17 00:51:44,249] [pool-1-thread-2] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-17 00:51:46,694] [pool-1-thread-8] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-17 00:51:48,101] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-17 00:51:48,764] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-17 00:51:51,058] [pool-1-thread-8] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-17 00:51:51,918] [pool-1-thread-2] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-17 00:51:52,558] [pool-1-thread-4] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-17 00:52:02,852] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-17 00:52:04,459] [pool-1-thread-5] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-17 00:52:11,724] [pool-1-thread-8] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-17 00:52:12,783] [pool-1-thread-2] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-17 00:52:22,850] [pool-1-thread-10] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-17 00:52:41,983] [pool-1-thread-8] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-17 00:52:45,614] [pool-1-thread-8] Initializing /data/david/Image0016.oib: [testng] [2024-11-17 00:52:48,878] [pool-1-thread-8] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-17 00:53:23,153] [pool-1-thread-8] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-17 00:53:26,510] [pool-1-thread-8] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-17 00:53:53,096] [pool-1-thread-8] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-17 00:53:58,937] [pool-1-thread-8] Initializing /data/jae/Image0001.oib: [testng] [2024-11-17 00:54:05,674] [pool-1-thread-8] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-17 00:54:12,364] [pool-1-thread-8] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-17 00:54:37,595] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-17 00:54:41,355] [pool-1-thread-8] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-17 00:54:42,674] [pool-1-thread-8] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-17 00:54:46,721] [pool-1-thread-8] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-17 00:54:48,977] [pool-1-thread-8] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-17 00:56:27,512] [pool-1-thread-6] Initializing /data/johannes/step4.bmp: [testng] [2024-11-17 00:56:30,301] [pool-1-thread-6] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-17 00:56:35,971] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-17 00:56:44,915] [pool-1-thread-6] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-17 00:56:48,967] [pool-1-thread-6] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-17 00:57:16,659] [pool-1-thread-6] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-17 00:57:22,342] [pool-1-thread-6] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-17 01:01:55,231] [pool-1-thread-7] Initializing /data/sten/01.oib: [testng] [2024-11-17 01:01:59,004] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-17 01:02:02,166] [pool-1-thread-7] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-17 01:03:10,676] [pool-1-thread-11] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-17 01:03:14,571] [pool-1-thread-11] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-17 01:03:49,785] [pool-1-thread-11] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-17 01:03:55,622] [pool-1-thread-11] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-17 01:04:00,993] [pool-1-thread-11] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-17 01:04:05,833] [pool-1-thread-11] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-17 01:04:09,601] [pool-1-thread-11] Initializing /data/aryeh/1h.oib: [testng] [2024-11-17 01:04:18,859] [pool-1-thread-11] Initializing /data/glen/111407.oif: [testng] [2024-11-17 01:04:33,849] [pool-1-thread-12] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-17 01:04:40,324] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-17 01:04:44,139] [pool-1-thread-12] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-11-17 01:07:16,217] [pool-1-thread-2] Initializing /data/monica/Image0056.oif: [testng] [2024-11-17 01:08:01,976] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-17 01:08:07,364] [pool-1-thread-2] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-17 01:08:12,178] [pool-1-thread-2] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-17 01:08:17,676] [pool-1-thread-2] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-17 01:08:22,301] [pool-1-thread-2] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-17 01:09:16,201] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-17 01:09:37,764] [pool-1-thread-10] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-17 01:10:06,471] [pool-1-thread-5] Initializing /data/christian/20min.oif: [testng] [2024-11-17 01:10:07,383] [pool-1-thread-10] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-17 01:10:20,629] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-17 01:10:24,159] [pool-1-thread-9] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-17 01:10:25,154] [pool-1-thread-5] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-17 01:10:29,921] [pool-1-thread-10] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-17 01:10:30,507] [pool-1-thread-5] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-17 01:10:35,762] [pool-1-thread-5] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-17 01:10:54,473] [pool-1-thread-10] Initializing /data/glen/Image0002.oif: [testng] [2024-11-17 01:11:33,258] [pool-1-thread-2] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-17 01:11:34,422] [pool-1-thread-2] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-17 01:11:39,055] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-17 01:11:45,901] [pool-1-thread-2] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-17 01:11:50,857] [pool-1-thread-2] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-17 01:11:56,811] [pool-1-thread-2] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-17 01:12:01,328] [pool-1-thread-2] Initializing /data/michael/CELL3.oib: [testng] [2024-11-17 01:12:05,154] [pool-1-thread-2] Initializing /data/brian/FLIP.oib: [testng] [2024-11-17 01:12:11,369] [pool-1-thread-2] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-17 01:12:16,375] [pool-1-thread-2] Initializing /data/johannes/step1.bmp: [testng] [2024-11-17 01:12:18,464] [pool-1-thread-2] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-17 01:12:39,243] [pool-1-thread-9] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-17 01:12:42,331] [pool-1-thread-9] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-17 01:12:49,348] [pool-1-thread-5] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-17 01:12:54,316] [pool-1-thread-5] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-17 01:12:57,595] [pool-1-thread-5] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-17 01:13:01,335] [pool-1-thread-12] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-17 01:13:07,780] [pool-1-thread-5] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-17 01:13:10,057] [pool-1-thread-5] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-17 01:13:40,293] [pool-1-thread-4] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-17 01:13:47,871] [pool-1-thread-4] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-17 01:14:09,999] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-17 01:14:16,009] [pool-1-thread-5] Initializing /data/karl/Image0009.oib: [testng] [2024-11-17 01:14:19,121] [pool-1-thread-5] Initializing /data/molly/11OCT2.OIF: [testng] [2024-11-17 01:15:54,103] [pool-1-thread-11] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-17 01:16:01,891] [pool-1-thread-11] Initializing /data/johannes/step3.bmp: [testng] [2024-11-17 01:16:05,064] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-17 01:16:13,800] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-17 01:16:22,261] [pool-1-thread-11] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-17 01:16:29,944] [pool-1-thread-11] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-17 01:18:15,158] [pool-1-thread-3] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-17 01:18:25,838] [pool-1-thread-3] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-17 01:18:38,387] [pool-1-thread-6] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-17 01:18:45,846] [pool-1-thread-6] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-11-17 01:19:26,032] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-17 01:19:33,460] [pool-1-thread-6] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-17 01:28:24,898] [pool-1-thread-3] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-17 01:28:29,641] [pool-1-thread-3] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-17 01:28:36,381] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-17 01:28:43,114] [pool-1-thread-3] Initializing /data/johannes/step2.bmp: [testng] 02:38:24,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:38:24,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:24,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-17_02-38-24.log] [testng] 02:38:24,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f467bb9 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 114 minutes 35 seconds Finished: SUCCESS