Started by upstream project "BIOFORMATS-test-repo" build number 259
originally caused by:
Started by upstream project "Trigger" build number 283
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins7775156911291079660.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_40935_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 03:31:24,079 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:31:24,081 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 03:31:24,081 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:31:24,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:31:24,082 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:31:24,082 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:31:24,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:31:24,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:31:24,083 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:31:24,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:31:24,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:31:24,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:31:24,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:31:24,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:31:24,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:31:24,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:31:24,355 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:31:24,356 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:31:24,356 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:31:24,357 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:31:24,357 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 03:31:24,358 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 03:31:24,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 275 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-18 03:31:24,369] [main] java.version = 1.8.0_342
[testng] 03:31:24,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:31:24,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:31:24,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-18_03-31-24.log]
[testng] 03:31:24,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-18 03:31:24,435] [main] testng.directory = /data
[testng] [2024-11-18 03:31:24,435] [main] testng.configDirectory = /config
[testng] [2024-11-18 03:31:24,447] [main] testng.multiplier = 1.0
[testng] [2024-11-18 03:31:24,448] [main] testng.in-memory = false
[testng] [2024-11-18 03:31:24,448] [main] testng.allow-missing = false
[testng] [2024-11-18 03:31:24,448] [main] user.language = fr
[testng] [2024-11-18 03:31:24,448] [main] user.country = FR
[testng] [2024-11-18 03:31:24,448] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-18 03:31:37,013] [main] ----------------------------------------
[testng] [2024-11-18 03:31:37,013] [main] Total files: 944
[testng] [2024-11-18 03:31:37,013] [main] Scan time: 12.565 s (13 ms/file)
[testng] [2024-11-18 03:31:37,013] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-18 03:33:06,937] [pool-1-thread-1] Initializing /data/stjude/AntoDay1dblGRP.tif:
[testng] 03:33:06,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:33:06,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:33:06,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-18_03-33-06.log]
[testng] 03:33:06,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@510169c3 - End of configuration.
[testng] [2024-11-18 03:33:08,207] [pool-1-thread-12] Initializing /data/brian/Series002_z01.tif:
[testng] 03:33:08,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:33:08,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:33:08,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-18_03-33-08.log]
[testng] 03:33:08,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55d14953 - End of configuration.
[testng] [2024-11-18 03:33:10,073] [pool-1-thread-11] Initializing /data/martin/Series028_z00_ch00.tif:
[testng] 03:33:10,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:33:10,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:33:10,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-18_03-33-10.log]
[testng] 03:33:10,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13ae5a1e - End of configuration.
[testng] [2024-11-18 03:33:11,839] [pool-1-thread-10] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif:
[testng] 03:33:11,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:33:11,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:33:11,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-18_03-33-11.log]
[testng] 03:33:11,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e2c2eb5 - End of configuration.
[testng] [2024-11-18 03:33:13,351] [pool-1-thread-9] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF:
[testng] 03:33:13,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:33:13,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:33:13,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-18_03-33-13.log]
[testng] 03:33:13,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3428306b - End of configuration.
[testng] [2024-11-18 03:33:14,538] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblmysglGRP.tif:
[testng] 03:33:14,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:33:14,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:33:14,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-18_03-33-14.log]
[testng] 03:33:14,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@580bd9a9 - End of configuration.
[testng] [2024-11-18 03:33:15,797] [pool-1-thread-7] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif:
[testng] 03:33:15,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:33:15,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:33:15,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-18_03-33-15.log]
[testng] 03:33:15,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25c234b7 - End of configuration.
[testng] [2024-11-18 03:33:17,169] [pool-1-thread-6] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif:
[testng] 03:33:17,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:33:17,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:33:17,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-18_03-33-17.log]
[testng] 03:33:17,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47f969ad - End of configuration.
[testng] [2024-11-18 03:34:09,048] [pool-1-thread-5] Initializing /data/stjude/Antoday1dblcatsglGRP.tif:
[testng] 03:34:09,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:34:09,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:34:09,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-18_03-34-09.log]
[testng] 03:34:09,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6231f040 - End of configuration.
[testng] [2024-11-18 03:34:10,318] [pool-1-thread-4] Initializing /data/brian/Series002_z00_ch00.tif:
[testng] 03:34:10,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:34:10,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:34:10,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-18_03-34-10.log]
[testng] 03:34:10,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68948eb0 - End of configuration.
[testng] [2024-11-18 03:34:11,598] [pool-1-thread-3] Initializing /data/stjude/AntoDay4dblmyGRP.tif:
[testng] 03:34:11,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:34:11,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:34:11,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-18_03-34-11.log]
[testng] 03:34:11,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ec4b93d - End of configuration.
[testng] [2024-11-18 03:34:12,796] [pool-1-thread-2] Initializing /data/stjude/AntoDayzerocy3GRP.tif:
[testng] 03:34:12,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:34:12,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:34:12,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-18_03-34-12.log]
[testng] 03:34:12,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bbfb456 - End of configuration.
[testng] [2024-11-18 03:34:24,187] [pool-1-thread-9] Initializing /data/primate/Leica_Image.tif:
[testng] [2024-11-18 03:34:28,982] [pool-1-thread-12] Initializing /data/stjude/AntoDayzerocy3OVP.tif:
[testng] [2024-11-18 03:34:30,852] [pool-1-thread-5] Initializing /data/stjude/AntoDay4dblmy2GRP.tif:
[testng] 04:46:20,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:46:20,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:46:20,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-18_04-46-20.log]
[testng] 04:46:20,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@181d8899 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 74 minutes 59 seconds
Finished: SUCCESS