Started by upstream project "BIOFORMATS-test-repo" build number 260
originally caused by:
 Started by upstream project "Trigger" build number 284
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins16134592313792050947.sh
+ '[' leica = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_40955_merge_ci -v /uod/idr/repos/curated/leica:/data -v /uod/idr-scratch/merge-ci/curated/leica:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 00:21:17,227 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:21:17,229 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 00:21:17,229 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:21:17,230 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:21:17,230 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:21:17,231 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:21:17,231 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:21:17,231 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:21:17,232 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:21:17,232 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:21:17,233 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:21:17,233 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:21:17,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:21:17,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:21:17,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:21:17,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:21:17,430 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:21:17,430 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:21:17,430 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:21:17,431 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:21:17,431 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 00:21:17,432 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 00:21:17,432 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-19 00:21:17,441] [main] java.version = 11.0.16
   [testng] 00:21:17,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:21:17,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:17,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-19_00-21-17.log]
   [testng] 00:21:17,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-11-19 00:21:17,489] [main] testng.directory = /data
   [testng] [2024-11-19 00:21:17,489] [main] testng.configDirectory = /config
   [testng] [2024-11-19 00:21:17,499] [main] testng.multiplier = 1.0
   [testng] [2024-11-19 00:21:17,500] [main] testng.in-memory = false
   [testng] [2024-11-19 00:21:17,500] [main] testng.allow-missing = false
   [testng] [2024-11-19 00:21:17,500] [main] user.language = en
   [testng] [2024-11-19 00:21:17,500] [main] user.country = ${user.country}
   [testng] [2024-11-19 00:21:17,500] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-19 00:21:29,011] [main] ----------------------------------------
   [testng] [2024-11-19 00:21:29,011] [main] Total files: 5651
   [testng] [2024-11-19 00:21:29,011] [main] Scan time: 11.51 s (2 ms/file)
   [testng] [2024-11-19 00:21:29,011] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 44 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-19 00:21:49,253] [pool-1-thread-1] Initializing /data/berra/eggcmgfp230909/eggcmgfp230909.lei: 
   [testng] 00:21:49,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 00:21:49,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:49,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-19_00-21-49.log]
   [testng] 00:21:49,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@316bdcb9 - End of configuration.
   [testng] [2024-11-19 00:21:49,456] [pool-1-thread-12] Initializing /data/simon/Leica demo/CFP-DsRed YFP neg/CFP-DsRed YFP neg.lei: 
   [testng] 00:21:49,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 00:21:49,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:49,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-19_00-21-49.log]
   [testng] 00:21:49,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7241656f - End of configuration.
   [testng] [2024-11-19 00:21:49,626] [pool-1-thread-11] Initializing /data/matija/PapilioScale40x/PapilioScale40x.lei: 
   [testng] 00:21:49,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 00:21:49,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:49,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-19_00-21-49.log]
   [testng] 00:21:49,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46bd88a9 - End of configuration.
   [testng] [2024-11-19 00:21:49,786] [pool-1-thread-10] Initializing /data/martin/samples-SP2/samples-SP2.lei: 
   [testng] 00:21:49,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 00:21:49,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:49,787 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-19_00-21-49.log]
   [testng] 00:21:49,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49aff960 - End of configuration.
   [testng] [2024-11-19 00:21:49,982] [pool-1-thread-9] Initializing /data/constantin/cell6/cell6/Quant_Image_01.jpg: 
   [testng] 00:21:49,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 00:21:49,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:49,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-19_00-21-49.log]
   [testng] 00:21:49,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75819939 - End of configuration.
   [testng] [2024-11-19 00:21:50,010] [pool-1-thread-8] Initializing /data/constantin/cell6/Logo.jpg: 
   [testng] 00:21:50,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 00:21:50,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:50,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-19_00-21-50.log]
   [testng] 00:21:50,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7924674 - End of configuration.
   [testng] [2024-11-19 00:21:50,030] [pool-1-thread-7] Initializing /data/martin/100422_02-rg-100x_CF1/100422_02-rg-100x_CF1.lei: 
   [testng] 00:21:50,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 00:21:50,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:50,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-19_00-21-50.log]
   [testng] 00:21:50,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18439a60 - End of configuration.
   [testng] [2024-11-19 00:21:50,385] [pool-1-thread-6] Initializing /data/julie/biorad/8291mcd8_raw01.pic: 
   [testng] 00:21:50,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 00:21:50,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:50,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-19_00-21-50.log]
   [testng] 00:21:50,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@327925db - End of configuration.
   [testng] [2024-11-19 00:21:50,505] [pool-1-thread-5] Initializing /data/christophe/Leica stacks/Nf5.lei: 
   [testng] 00:21:50,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 00:21:50,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:50,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-19_00-21-50.log]
   [testng] 00:21:50,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@157eac6e - End of configuration.
   [testng] [2024-11-19 00:21:50,628] [pool-1-thread-4] Initializing /data/brian/leica-original/050118.lei: 
   [testng] 00:21:50,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 00:21:50,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:50,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-19_00-21-50.log]
   [testng] 00:21:50,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@198296f4 - End of configuration.
   [testng] [2024-11-19 00:21:51,133] [pool-1-thread-3] Initializing /data/oliver/o459/o459.lei: 
   [testng] 00:21:51,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 00:21:51,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:51,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-19_00-21-51.log]
   [testng] 00:21:51,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@239eefbc - End of configuration.
   [testng] [2024-11-19 00:21:51,267] [pool-1-thread-2] Initializing /data/constantin/cell6/cell6/Quant_Image_00.jpg: 
   [testng] 00:21:51,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 00:21:51,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:51,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-19_00-21-51.log]
   [testng] 00:21:51,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e9d9f78 - End of configuration.
   [testng] [2024-11-19 00:21:53,201] [pool-1-thread-9] Initializing /data/constantin/cell6/cell6.lei: 
   [testng] [2024-11-19 00:21:53,585] [pool-1-thread-2] Initializing /data/joel/sequential scan 3/sequential scan 3.lei: 
   [testng] [2024-11-19 00:21:53,990] [pool-1-thread-8] Initializing /data/andrey/10310500/10310500.lei: 
   [testng] [2024-11-19 00:21:57,776] [pool-1-thread-6] Initializing /data/vytas/4voxels/4voxels.lei: 
   [testng] [2024-11-19 00:23:46,079] [pool-1-thread-5] Initializing /data/grant/Leica SP2 (25-11-10).lei: 
   [testng] [2024-11-19 00:24:25,741] [pool-1-thread-11] Initializing /data/christophe/LEI_Saturated_Bug/070123_HippoQ2Q3/Exemple.tif: 
   [testng] [2024-11-19 00:24:31,518] [pool-1-thread-11] Initializing /data/michael/2007-01-31_zres_sp2.lei: 
   [testng] [2024-11-19 00:24:51,205] [pool-1-thread-11] Initializing /data/brian/tropo/tropo.lei: 
   [testng] [2024-11-19 00:25:15,808] [pool-1-thread-11] Initializing /data/constantin/cell6/Quant_Image_02.jpg: 
   [testng] [2024-11-19 00:25:17,813] [pool-1-thread-11] Initializing /data/julie/biorad/25-65.tif: 
   [testng] [2024-11-19 00:25:25,796] [pool-1-thread-11] Initializing /data/christophe/LEI_Saturated_Bug/Saturated_Problem.tif: 
   [testng] [2024-11-19 00:25:35,240] [pool-1-thread-11] Initializing /data/clay/leica_stack.lei: 
   [testng] [2024-11-19 00:25:46,392] [pool-1-thread-12] Initializing /data/constantin/cell6/Quant_Image_00.jpg: 
   [testng] [2024-11-19 00:25:46,579] [pool-1-thread-11] Initializing /data/mark/071026-561nm check/071026-561nm check.lei: 
   [testng] [2024-11-19 00:25:49,276] [pool-1-thread-12] Initializing /data/constantin/cell6/cell6/Quant_Image_02.jpg: 
   [testng] [2024-11-19 00:25:51,672] [pool-1-thread-12] Initializing /data/simon/Leica demo/RNA FISH/RNA FISH.lei: 
   [testng] [2024-11-19 00:26:34,951] [pool-1-thread-10] Initializing /data/christophe/LEI_Saturated_Bug/070123_HippoQ2Q3/070123_HippoQ2Q3.lei: 
   [testng] [2024-11-19 00:26:39,652] [pool-1-thread-9] Initializing /data/brian/050627-leica/050628-leica.lei: 
   [testng] [2024-11-19 00:26:47,018] [pool-1-thread-2] Initializing /data/clay/leica_stack.tif: 
   [testng] [2024-11-19 00:26:50,337] [pool-1-thread-2] Initializing /data/simon/Leica demo/GFP-YFPcaax/GFP-YFPcaax.lei: 
   [testng] [2024-11-19 00:27:50,788] [pool-1-thread-12] Initializing /data/david/megan/megan.lei: 
   [testng] [2024-11-19 00:28:06,336] [pool-1-thread-10] Initializing /data/samples/Leica_sample.lei: 
   [testng] [2024-11-19 00:28:07,090] [pool-1-thread-1] Initializing /data/stjude/NIHSSE02-3.lei: 
   [testng] [2024-11-19 00:28:12,848] [pool-1-thread-10] Initializing /data/julie/c164_1.tif: 
   [testng] [2024-11-19 00:28:20,376] [pool-1-thread-10] Initializing /data/clay/leica_stack-exported/leica_stack-exported.lei: 
   [testng] [2024-11-19 00:28:28,987] [pool-1-thread-10] Initializing /data/joel/sequential scan 2/sequential scan 2.lei: 
   [testng] [2024-11-19 00:28:38,243] [pool-1-thread-2] Initializing /data/constantin/cell6/Quant_Image_01.jpg: 
   [testng] [2024-11-19 00:28:39,829] [pool-1-thread-2] Initializing /data/simon/Leica demo/test/test.lei: 
   [testng] [2024-11-19 00:28:43,455] [pool-1-thread-1] Initializing /data/constantin/cell6/cell6/Logo.jpg: 
   [testng] [2024-11-19 00:28:44,827] [pool-1-thread-1] Initializing /data/david/intestine/intestine.lei: 
   [testng] [2024-11-19 00:28:49,307] [pool-1-thread-4] Initializing /data/constantin/cell6/Graphs_1_00.jpg: 
   [testng] [2024-11-19 00:28:50,984] [pool-1-thread-4] Initializing /data/simon/Leica demo/fish/fish.lei: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 2332, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 26 minutes 34 seconds
Finished: SUCCESS