Started by upstream project "BIOFORMATS-test-repo" build number 260
originally caused by:
Started by upstream project "Trigger" build number 284
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins16368337505688802662.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_41089_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 03:09:56,416 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:09:56,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 03:09:56,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:09:56,419 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:09:56,419 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:09:56,419 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:09:56,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:09:56,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:09:56,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:09:56,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:09:56,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:09:56,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:09:56,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:09:56,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:09:56,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:09:56,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:09:56,614 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:09:56,614 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:09:56,615 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:09:56,615 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:09:56,615 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 03:09:56,616 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 03:09:56,616 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-19 03:09:56,625] [main] java.version = 11.0.16
[testng] 03:09:56,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:09:56,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:56,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-19_03-09-56.log]
[testng] 03:09:56,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-19 03:09:56,673] [main] testng.directory = /data
[testng] [2024-11-19 03:09:56,673] [main] testng.configDirectory = /config
[testng] [2024-11-19 03:09:56,683] [main] testng.multiplier = 1.0
[testng] [2024-11-19 03:09:56,684] [main] testng.in-memory = false
[testng] [2024-11-19 03:09:56,684] [main] testng.allow-missing = false
[testng] [2024-11-19 03:09:56,684] [main] user.language = en
[testng] [2024-11-19 03:09:56,684] [main] user.country = ${user.country}
[testng] [2024-11-19 03:09:56,684] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-19 03:09:57,390] [main] ----------------------------------------
[testng] [2024-11-19 03:09:57,390] [main] Total files: 18
[testng] [2024-11-19 03:09:57,390] [main] Scan time: 0.705 s (39 ms/file)
[testng] [2024-11-19 03:09:57,390] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-19 03:10:03,042] [pool-1-thread-1] Initializing /data/big-images/8kx8k.psd:
[testng] 03:10:03,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:10:03,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:03,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-19_03-10-03.log]
[testng] 03:10:03,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1868abd8 - End of configuration.
[testng] [2024-11-19 03:10:03,302] [pool-1-thread-12] Initializing /data/misc/glossy_orbs.psd:
[testng] 03:10:03,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:10:03,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:03,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-19_03-10-03.log]
[testng] 03:10:03,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7147df0c - End of configuration.
[testng] [2024-11-19 03:10:03,626] [pool-1-thread-11] Initializing /data/ascb/607x.psd:
[testng] 03:10:03,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:10:03,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:03,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-19_03-10-03.log]
[testng] 03:10:03,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8906db3 - End of configuration.
[testng] [2024-11-19 03:10:03,884] [pool-1-thread-10] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] 03:10:03,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:10:03,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:03,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-19_03-10-03.log]
[testng] 03:10:03,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73a93285 - End of configuration.
[testng] [2024-11-19 03:10:04,202] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] 03:10:04,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:10:04,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:04,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-19_03-10-04.log]
[testng] 03:10:04,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66996649 - End of configuration.
[testng] [2024-11-19 03:10:04,457] [pool-1-thread-8] Initializing /data/misc/venus_composite.psd:
[testng] 03:10:04,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:10:04,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:04,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-19_03-10-04.log]
[testng] 03:10:04,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e206dd - End of configuration.
[testng] [2024-11-19 03:10:04,699] [pool-1-thread-7] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] 03:10:04,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:10:04,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:04,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-19_03-10-04.log]
[testng] 03:10:04,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34aaa8c2 - End of configuration.
[testng] [2024-11-19 03:10:04,952] [pool-1-thread-6] Initializing /data/misc/smilie.psd:
[testng] 03:10:04,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:10:04,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:04,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-19_03-10-04.log]
[testng] 03:10:04,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c1e8179 - End of configuration.
[testng] [2024-11-19 03:10:05,271] [pool-1-thread-5] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 03:10:05,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:10:05,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:05,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-19_03-10-05.log]
[testng] 03:10:05,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@333a499c - End of configuration.
[testng] [2024-11-19 03:10:05,589] [pool-1-thread-4] Initializing /data/cris/house.tif:
[testng] 03:10:05,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:10:05,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:05,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-19_03-10-05.log]
[testng] 03:10:05,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37964476 - End of configuration.
[testng] [2024-11-19 03:10:06,420] [pool-1-thread-3] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] 03:10:06,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:10:06,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:06,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-19_03-10-06.log]
[testng] 03:10:06,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@220d0e30 - End of configuration.
[testng] [2024-11-19 03:10:06,659] [pool-1-thread-2] Initializing /data/misc/glossy_buttons.psd:
[testng] 03:10:06,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:10:06,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:06,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-19_03-10-06.log]
[testng] 03:10:06,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a5df8e1 - End of configuration.
[testng] [2024-11-19 03:10:10,201] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd:
[testng] [2024-11-19 03:10:10,620] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd:
[testng] [2024-11-19 03:10:10,913] [pool-1-thread-2] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] [2024-11-19 03:10:11,310] [pool-1-thread-3] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] [2024-11-19 03:10:11,644] [pool-1-thread-5] Initializing /data/misc/venus_composite_8bit.psd:
[testng] [2024-11-19 03:10:11,938] [pool-1-thread-7] Initializing /data/ascb/423.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 34 seconds
Finished: SUCCESS