Started by upstream project "BIOFORMATS-test-repo" build number 260
originally caused by:
 Started by upstream project "Trigger" build number 284
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6656341720043612260.sh
+ '[' obf = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_41108_merge_ci -v /uod/idr/repos/curated/obf:/data -v /uod/idr-scratch/merge-ci/curated/obf:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 04:01:13,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 04:01:13,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 04:01:13,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:01:13,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:01:13,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 04:01:13,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 04:01:13,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 04:01:13,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:01:13,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:01:13,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 04:01:13,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 04:01:13,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 04:01:13,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 04:01:13,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 04:01:13,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 04:01:13,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 04:01:13,395 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 04:01:13,395 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 04:01:13,395 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 04:01:13,396 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 04:01:13,396 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 04:01:13,396 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 04:01:13,396 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-19 04:01:13,405] [main] java.version = 11.0.16
   [testng] 04:01:13,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 04:01:13,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:01:13,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-19_04-01-13.log]
   [testng] 04:01:13,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-11-19 04:01:13,455] [main] testng.directory = /data
   [testng] [2024-11-19 04:01:13,455] [main] testng.configDirectory = /config
   [testng] [2024-11-19 04:01:13,465] [main] testng.multiplier = 1.0
   [testng] [2024-11-19 04:01:13,466] [main] testng.in-memory = false
   [testng] [2024-11-19 04:01:13,466] [main] testng.allow-missing = false
   [testng] [2024-11-19 04:01:13,466] [main] user.language = en
   [testng] [2024-11-19 04:01:13,467] [main] user.country = ${user.country}
   [testng] [2024-11-19 04:01:13,467] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-19 04:01:32,788] [main] ----------------------------------------
   [testng] [2024-11-19 04:01:32,788] [main] Total files: 12
   [testng] [2024-11-19 04:01:32,788] [main] Scan time: 19.321 s (1610 ms/file)
   [testng] [2024-11-19 04:01:32,788] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 11 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-19 04:01:56,390] [pool-1-thread-1] Initializing /data/public/ngladitz/v6/test-v6-uncompressed.obf: 
   [testng] 04:01:56,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 04:01:56,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:01:56,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-19_04-01-56.log]
   [testng] 04:01:56,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75283b60 - End of configuration.
   [testng] [2024-11-19 04:01:58,575] [pool-1-thread-11] Initializing /data/tristan/Example_Chrimson_Beads_40nm.msr: 
   [testng] 04:01:58,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 04:01:58,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:01:58,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-19_04-01-58.log]
   [testng] 04:01:58,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@739df216 - End of configuration.
   [testng] [2024-11-19 04:02:00,116] [pool-1-thread-10] Initializing /data/zoltan/3D-CONFOCAL-PSF-235nm.msr: 
   [testng] 04:02:00,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 04:02:00,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:02:00,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-19_04-02-00.log]
   [testng] 04:02:00,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17d5f60b - End of configuration.
   [testng] [2024-11-19 04:02:01,640] [pool-1-thread-9] Initializing /data/public/ngladitz/v4/test-v4.obf: 
   [testng] 04:02:01,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 04:02:01,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:02:01,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-19_04-02-01.log]
   [testng] 04:02:01,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46402ea0 - End of configuration.
   [testng] [2024-11-19 04:02:03,278] [pool-1-thread-8] Initializing /data/bjoernthiel/20191106__zstack.msr: 
   [testng] 04:02:03,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 04:02:03,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:02:03,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-19_04-02-03.log]
   [testng] 04:02:03,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20dafef5 - End of configuration.
   [testng] [2024-11-19 04:02:04,865] [pool-1-thread-7] Initializing /data/qa-17111/before 1.msr: 
   [testng] 04:02:04,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 04:02:04,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:02:04,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-19_04-02-04.log]
   [testng] 04:02:04,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ac8f342 - End of configuration.
   [testng] [2024-11-19 04:02:07,346] [pool-1-thread-6] Initializing /data/qa-16895/Measurement1.msr: 
   [testng] 04:02:07,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 04:02:07,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:02:07,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-19_04-02-07.log]
   [testng] 04:02:07,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@169dbcc6 - End of configuration.
   [testng] [2024-11-19 04:02:08,911] [pool-1-thread-5] Initializing /data/public/ngladitz/v6/test-v6-short-write.obf: 
   [testng] 04:02:08,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 04:02:08,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:02:08,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-19_04-02-08.log]
   [testng] 04:02:08,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79261ee8 - End of configuration.
   [testng] [2024-11-19 04:02:10,529] [pool-1-thread-4] Initializing /data/public/ngladitz/v6/test-v6.obf: 
   [testng] 04:02:10,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 04:02:10,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:02:10,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-19_04-02-10.log]
   [testng] 04:02:10,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a0874dd - End of configuration.
   [testng] [2024-11-19 04:02:12,361] [pool-1-thread-3] Initializing /data/public/ngladitz/v4/test-v4-uncompressed.obf: 
   [testng] 04:02:12,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 04:02:12,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:02:12,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-19_04-02-12.log]
   [testng] 04:02:12,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37d02cb9 - End of configuration.
   [testng] [2024-11-19 04:02:14,083] [pool-1-thread-2] Initializing /data/qa-27923/test.obf: 
   [testng] 04:02:14,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 04:02:14,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:02:14,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-19_04-02-14.log]
   [testng] 04:02:14,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6550589a - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 583, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 40 seconds
Finished: SUCCESS