Started by upstream project "BIOFORMATS-test-repo" build number 261
originally caused by:
Started by upstream project "Trigger" build number 285
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins6098677846872596468.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_41148_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:34:09,976 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:34:09,978 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:34:09,978 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:34:09,979 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:34:09,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:34:09,980 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:34:09,980 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:34:09,980 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:34:09,981 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:34:09,981 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:34:09,982 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:34:09,982 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:34:10,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:34:10,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:34:10,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:34:10,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:34:10,173 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:34:10,174 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:34:10,174 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:34:10,174 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:34:10,174 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:34:10,175 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:34:10,175 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-20 00:34:10,184] [main] java.version = 17.0.2
[testng] 00:34:10,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:34:10,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:10,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-20_00-34-10.log]
[testng] 00:34:10,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-11-20 00:34:10,232] [main] testng.directory = /data
[testng] [2024-11-20 00:34:10,232] [main] testng.configDirectory = /config
[testng] [2024-11-20 00:34:10,240] [main] testng.multiplier = 1.0
[testng] [2024-11-20 00:34:10,241] [main] testng.in-memory = false
[testng] [2024-11-20 00:34:10,241] [main] testng.allow-missing = false
[testng] [2024-11-20 00:34:10,241] [main] user.language = en
[testng] [2024-11-20 00:34:10,241] [main] user.country = ${user.country}
[testng] [2024-11-20 00:34:10,241] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-20 00:34:14,964] [main] ----------------------------------------
[testng] [2024-11-20 00:34:14,965] [main] Total files: 21
[testng] [2024-11-20 00:34:14,965] [main] Scan time: 4.723 s (224 ms/file)
[testng] [2024-11-20 00:34:14,965] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-20 00:34:31,729] [pool-1-thread-1] Initializing /data/venu/VENU01.IMG:
[testng] 00:34:31,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:34:31,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:31,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-20_00-34-31.log]
[testng] 00:34:31,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e99ba4d - End of configuration.
[testng] [2024-11-20 00:34:31,979] [pool-1-thread-12] Initializing /data/venu/VENU_Eight.TIF:
[testng] 00:34:31,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:34:31,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:31,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-20_00-34-31.log]
[testng] 00:34:31,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3964cf15 - End of configuration.
[testng] [2024-11-20 00:34:32,704] [pool-1-thread-11] Initializing /data/venu/VENU02.TIF:
[testng] 00:34:32,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:34:32,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:32,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-20_00-34-32.log]
[testng] 00:34:32,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@146179f9 - End of configuration.
[testng] [2024-11-20 00:34:33,491] [pool-1-thread-10] Initializing /data/venu/VENU01.TIF:
[testng] 00:34:33,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:34:33,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:33,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-20_00-34-33.log]
[testng] 00:34:33,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@279f462a - End of configuration.
[testng] [2024-11-20 00:34:34,233] [pool-1-thread-9] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng] 00:34:34,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:34:34,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:34,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-20_00-34-34.log]
[testng] 00:34:34,234 |-INFO in ch.qos.logback.core.sift.SiftProcessor@552b1648 - End of configuration.
[testng] [2024-11-20 00:34:34,955] [pool-1-thread-8] Initializing /data/venu/VENU03.IMG:
[testng] 00:34:34,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:34:34,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:34,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-20_00-34-34.log]
[testng] 00:34:34,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@624da710 - End of configuration.
[testng] [2024-11-20 00:34:35,215] [pool-1-thread-7] Initializing /data/venu/VENU03.TIF:
[testng] 00:34:35,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:34:35,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:35,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-20_00-34-35.log]
[testng] 00:34:35,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47f2b635 - End of configuration.
[testng] [2024-11-20 00:34:36,008] [pool-1-thread-6] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] 00:34:36,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:34:36,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:36,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-20_00-34-36.log]
[testng] 00:34:36,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d4dc4b1 - End of configuration.
[testng] [2024-11-20 00:34:36,848] [pool-1-thread-5] Initializing /data/venu/VENU_Seven.TIF:
[testng] 00:34:36,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:34:36,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:36,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-20_00-34-36.log]
[testng] 00:34:36,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@743c9693 - End of configuration.
[testng] [2024-11-20 00:34:37,708] [pool-1-thread-4] Initializing /data/venu/VENU.TIF:
[testng] 00:34:37,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:34:37,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:37,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-20_00-34-37.log]
[testng] 00:34:37,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15564bbe - End of configuration.
[testng] [2024-11-20 00:34:38,548] [pool-1-thread-3] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 00:34:38,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:34:38,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:38,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-20_00-34-38.log]
[testng] 00:34:38,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c3e97fb - End of configuration.
[testng] [2024-11-20 00:34:39,431] [pool-1-thread-2] Initializing /data/steffen/Batman_008.tif:
[testng] 00:34:39,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:34:39,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:39,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-20_00-34-39.log]
[testng] 00:34:39,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@549d4219 - End of configuration.
[testng] [2024-11-20 00:34:45,000] [pool-1-thread-1] Initializing /data/venu/VENU_Five.TIF:
[testng] [2024-11-20 00:34:45,809] [pool-1-thread-8] Initializing /data/venu/VENU_Six.TIF:
[testng] [2024-11-20 00:34:50,224] [pool-1-thread-5] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] [2024-11-20 00:34:51,178] [pool-1-thread-9] Initializing /data/venu/VENU02.IMG:
[testng] [2024-11-20 00:34:51,497] [pool-1-thread-12] Initializing /data/venu/VENU_Four.TIF:
[testng] [2024-11-20 00:34:52,396] [pool-1-thread-2] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 54 seconds
Finished: SUCCESS