Started by upstream project "BIOFORMATS-test-repo" build number 262 originally caused by: Started by upstream project "Trigger" build number 286 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13899661854625357174.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41287_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:20:40,085 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:20:40,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:20:40,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:20:40,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:20:40,088 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:20:40,089 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:20:40,089 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:20:40,089 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:20:40,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:20:40,090 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:20:40,090 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:20:40,091 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:20:40,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:20:40,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:20:40,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:20:40,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:20:40,275 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:20:40,275 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:20:40,275 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:20:40,276 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:20:40,276 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:20:40,276 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:20:40,276 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-21 00:20:40,285] [main] java.version = 21 [testng] 00:20:40,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:20:40,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:20:40,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_00-20-40.log] [testng] 00:20:40,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-21 00:20:40,332] [main] testng.directory = /data [testng] [2024-11-21 00:20:40,333] [main] testng.configDirectory = /config [testng] [2024-11-21 00:20:40,341] [main] testng.multiplier = 1.0 [testng] [2024-11-21 00:20:40,342] [main] testng.in-memory = false [testng] [2024-11-21 00:20:40,342] [main] testng.allow-missing = false [testng] [2024-11-21 00:20:40,342] [main] user.language = en [testng] [2024-11-21 00:20:40,342] [main] user.country = ${user.country} [testng] [2024-11-21 00:20:40,342] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-21 00:20:46,175] [main] ---------------------------------------- [testng] [2024-11-21 00:20:46,175] [main] Total files: 103 [testng] [2024-11-21 00:20:46,175] [main] Scan time: 5.833 s (56 ms/file) [testng] [2024-11-21 00:20:46,176] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-21 00:20:59,926] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e4.tif: [testng] 00:20:59,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:20:59,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:20:59,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-21_00-20-59.log] [testng] 00:20:59,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@473922b8 - End of configuration. [testng] [2024-11-21 00:21:00,198] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] 00:21:00,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:21:00,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:00,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-21_00-21-00.log] [testng] 00:21:00,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@401f6766 - End of configuration. [testng] [2024-11-21 00:21:00,254] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] 00:21:00,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:21:00,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:00,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-21_00-21-00.log] [testng] 00:21:00,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a06e636 - End of configuration. [testng] [2024-11-21 00:21:00,304] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] 00:21:00,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:21:00,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:00,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-21_00-21-00.log] [testng] 00:21:00,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@154faf70 - End of configuration. [testng] [2024-11-21 00:21:00,369] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] 00:21:00,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:21:00,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:00,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-21_00-21-00.log] [testng] 00:21:00,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d2199a2 - End of configuration. [testng] [2024-11-21 00:21:00,427] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] 00:21:00,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:21:00,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:00,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-21_00-21-00.log] [testng] 00:21:00,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c90db86 - End of configuration. [testng] [2024-11-21 00:21:00,474] [pool-1-thread-7] Initializing /data/jay/biosamplefullframetif.tif: [testng] 00:21:00,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:21:00,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:00,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-21_00-21-00.log] [testng] 00:21:00,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66e9ed07 - End of configuration. [testng] [2024-11-21 00:21:00,768] [pool-1-thread-6] Initializing /data/jay/Carbon.34.dm3: [testng] 00:21:00,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:21:00,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:00,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-21_00-21-00.log] [testng] 00:21:00,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56c73bfd - End of configuration. [testng] [2024-11-21 00:21:00,821] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] 00:21:00,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:21:00,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:00,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-21_00-21-00.log] [testng] 00:21:00,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@246e4a0a - End of configuration. [testng] [2024-11-21 00:21:00,889] [pool-1-thread-4] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] 00:21:00,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:21:00,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:00,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_00-21-00.log] [testng] 00:21:00,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e97e46 - End of configuration. [testng] [2024-11-21 00:21:00,998] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] 00:21:00,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:21:00,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:00,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_00-21-00.log] [testng] 00:21:00,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e4cd742 - End of configuration. [testng] [2024-11-21 00:21:01,081] [pool-1-thread-2] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] 00:21:01,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:21:01,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:01,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-21_00-21-01.log] [testng] 00:21:01,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66f6340e - End of configuration. [testng] [2024-11-21 00:21:03,763] [pool-1-thread-9] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-11-21 00:21:03,812] [pool-1-thread-12] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-11-21 00:21:04,432] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-11-21 00:21:04,729] [pool-1-thread-3] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2024-11-21 00:21:05,361] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-11-21 00:21:05,428] [pool-1-thread-8] Initializing /data/jay/DMtest.dm3: [testng] [2024-11-21 00:21:05,825] [pool-1-thread-1] Initializing /data/jay/smallerfile.dm3: [testng] [2024-11-21 00:21:06,135] [pool-1-thread-2] Initializing /data/jay/dnasample.tif: [testng] [2024-11-21 00:21:06,881] [pool-1-thread-5] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-11-21 00:21:07,193] [pool-1-thread-6] Initializing /data/qa-7642/8.dm4: [testng] [2024-11-21 00:21:08,069] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-11-21 00:21:08,357] [pool-1-thread-10] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-11-21 00:21:08,959] [pool-1-thread-1] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-11-21 00:21:09,724] [pool-1-thread-9] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-11-21 00:21:10,861] [pool-1-thread-7] Initializing /data/melissa/annotation-test.tif: [testng] [2024-11-21 00:21:12,123] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-11-21 00:21:12,622] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-11-21 00:21:12,821] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-11-21 00:21:13,005] [pool-1-thread-8] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-11-21 00:21:13,242] [pool-1-thread-4] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-11-21 00:21:13,658] [pool-1-thread-3] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-11-21 00:21:16,022] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2024-11-21 00:21:16,548] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-11-21 00:21:16,910] [pool-1-thread-4] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-11-21 00:21:19,542] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-11-21 00:21:20,381] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-11-21 00:21:20,676] [pool-1-thread-2] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-11-21 00:21:22,567] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-11-21 00:21:23,240] [pool-1-thread-7] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-11-21 00:21:25,391] [pool-1-thread-9] Initializing /data/jay/DMtest2.dm3: [testng] [2024-11-21 00:21:25,931] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-11-21 00:21:26,516] [pool-1-thread-7] Initializing /data/ofra/lowloss.dm3: [testng] [2024-11-21 00:21:27,029] [pool-1-thread-6] Initializing /data/samples/test-tiles.dm3: [testng] [2024-11-21 00:21:27,892] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-11-21 00:21:28,973] [pool-1-thread-7] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-11-21 00:21:30,525] [pool-1-thread-11] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-11-21 00:21:30,895] [pool-1-thread-6] Initializing /data/jay/dnasample1.dm3: [testng] [2024-11-21 00:21:31,326] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-11-21 00:21:32,584] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-11-21 00:21:33,011] [pool-1-thread-3] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-11-21 00:21:33,258] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-11-21 00:21:33,738] [pool-1-thread-12] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-11-21 00:21:35,171] [pool-1-thread-4] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-11-21 00:21:35,734] [pool-1-thread-5] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-11-21 00:21:36,718] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-11-21 00:21:37,242] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-11-21 00:21:37,462] [pool-1-thread-10] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2024-11-21 00:21:38,834] [pool-1-thread-2] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-11-21 00:21:39,403] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-11-21 00:21:39,998] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-11-21 00:21:40,745] [pool-1-thread-5] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-11-21 00:21:41,706] [pool-1-thread-11] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-11-21 00:21:42,002] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-11-21 00:21:42,560] [pool-1-thread-3] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-11-21 00:21:43,287] [pool-1-thread-6] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-11-21 00:21:43,543] [pool-1-thread-7] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-11-21 00:21:45,217] [pool-1-thread-8] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-11-21 00:21:46,800] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-11-21 00:21:47,806] [pool-1-thread-2] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-11-21 00:21:49,236] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-11-21 00:21:49,475] [pool-1-thread-5] Initializing /data/jay/camtest1.dm3: [testng] [2024-11-21 00:21:51,403] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-11-21 00:21:51,696] [pool-1-thread-10] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-11-21 00:21:51,935] [pool-1-thread-12] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-11-21 00:21:52,198] [pool-1-thread-1] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-11-21 00:21:53,307] [pool-1-thread-11] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-11-21 00:21:55,485] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-11-21 00:21:55,899] [pool-1-thread-5] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-11-21 00:21:56,149] [pool-1-thread-12] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-11-21 00:21:58,343] [pool-1-thread-3] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-11-21 00:21:58,625] [pool-1-thread-1] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2024-11-21 00:21:59,275] [pool-1-thread-4] Initializing /data/jay/ViewDMtest.dm3: [testng] [2024-11-21 00:22:00,027] [pool-1-thread-8] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-11-21 00:22:00,941] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2024-11-21 00:22:01,216] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-11-21 00:22:01,985] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-11-21 00:22:02,268] [pool-1-thread-6] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-11-21 00:22:03,745] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-11-21 00:22:04,169] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-11-21 00:22:05,949] [pool-1-thread-11] Initializing /data/qa-21761/example.dm4: [testng] [2024-11-21 00:22:06,742] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-11-21 00:22:06,982] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-11-21 00:22:07,214] [pool-1-thread-8] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-11-21 00:22:07,438] [pool-1-thread-9] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-11-21 00:22:08,847] [pool-1-thread-4] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-11-21 00:22:10,346] [pool-1-thread-12] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 45 seconds Finished: SUCCESS