Started by upstream project "BIOFORMATS-test-repo" build number 31
originally caused by:
 Started by upstream project "Trigger" build number 35
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15998993864225673274.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_4139_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 07:35:39,796 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 07:35:39,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 07:35:39,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 07:35:39,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 07:35:39,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 07:35:39,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 07:35:39,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 07:35:39,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 07:35:39,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 07:35:39,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 07:35:39,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 07:35:39,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 07:35:40,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 07:35:40,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 07:35:40,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 07:35:40,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 07:35:40,074 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 07:35:40,075 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 07:35:40,075 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 07:35:40,075 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 07:35:40,075 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 07:35:40,076 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 07:35:40,076 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-12 07:35:40,086] [main] java.version = 1.8.0_342
   [testng] 07:35:40,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 07:35:40,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:40,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_07-35-40.log]
   [testng] 07:35:40,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-04-12 07:35:40,136] [main] testng.directory = /data
   [testng] [2024-04-12 07:35:40,136] [main] testng.configDirectory = /config
   [testng] [2024-04-12 07:35:40,148] [main] testng.multiplier = 1.0
   [testng] [2024-04-12 07:35:40,148] [main] testng.in-memory = false
   [testng] [2024-04-12 07:35:40,148] [main] testng.allow-missing = false
   [testng] [2024-04-12 07:35:40,148] [main] user.language = en
   [testng] [2024-04-12 07:35:40,148] [main] user.country = ${user.country}
   [testng] [2024-04-12 07:35:40,148] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-04-12 07:35:41,224] [main] ----------------------------------------
   [testng] [2024-04-12 07:35:41,224] [main] Total files: 25
   [testng] [2024-04-12 07:35:41,224] [main] Scan time: 1.076 s (43 ms/file)
   [testng] [2024-04-12 07:35:41,225] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 18 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-12 07:35:42,308] [pool-1-thread-1] Initializing /data/imagic/not read correctly/Zucchini.dm2: 
   [testng] 07:35:42,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 07:35:42,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:42,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_07-35-42.log]
   [testng] 07:35:42,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cebd9d - End of configuration.
   [testng] [2024-04-12 07:35:42,339] [pool-1-thread-12] Initializing /data/imagic/not read correctly/Abeta Moon.dm2: 
   [testng] 07:35:42,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 07:35:42,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:42,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-12_07-35-42.log]
   [testng] 07:35:42,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70bb634b - End of configuration.
   [testng] [2024-04-12 07:35:42,351] [pool-1-thread-11] Initializing /data/pang/unproc-auto: 
   [testng] 07:35:42,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 07:35:42,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:42,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_07-35-42.log]
   [testng] 07:35:42,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@615d35b0 - End of configuration.
   [testng] [2024-04-12 07:35:42,364] [pool-1-thread-10] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png: 
   [testng] 07:35:42,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 07:35:42,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:42,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_07-35-42.log]
   [testng] 07:35:42,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c31dda0 - End of configuration.
   [testng] [2024-04-12 07:35:42,370] [pool-1-thread-9] Initializing /data/pang/10500x-o4: 
   [testng] 07:35:42,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 07:35:42,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:42,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_07-35-42.log]
   [testng] 07:35:42,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a8bd1c8 - End of configuration.
   [testng] [2024-04-12 07:35:42,381] [pool-1-thread-8] Initializing /data/pang/DLMeD2E1_010500x03.dm2: 
   [testng] 07:35:42,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 07:35:42,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:42,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_07-35-42.log]
   [testng] 07:35:42,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@192bf027 - End of configuration.
   [testng] [2024-04-12 07:35:42,397] [pool-1-thread-7] Initializing /data/imagic/13008.dm2: 
   [testng] 07:35:42,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 07:35:42,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:42,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_07-35-42.log]
   [testng] 07:35:42,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f9eccec - End of configuration.
   [testng] [2024-04-12 07:35:42,413] [pool-1-thread-6] Initializing /data/imagic/TEM 10118.dm2: 
   [testng] 07:35:42,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 07:35:42,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:42,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_07-35-42.log]
   [testng] 07:35:42,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6226c8c4 - End of configuration.
   [testng] [2024-04-12 07:35:42,434] [pool-1-thread-5] Initializing /data/imagic/1-1.dm2: 
   [testng] 07:35:42,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 07:35:42,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:42,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_07-35-42.log]
   [testng] 07:35:42,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ed0e726 - End of configuration.
   [testng] [2024-04-12 07:35:42,455] [pool-1-thread-4] Initializing /data/imagic/not read correctly/Zucchini_preview.png: 
   [testng] 07:35:42,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 07:35:42,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:42,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_07-35-42.log]
   [testng] 07:35:42,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4509df77 - End of configuration.
   [testng] [2024-04-12 07:35:42,461] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png: 
   [testng] 07:35:42,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 07:35:42,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:42,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_07-35-42.log]
   [testng] 07:35:42,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76a81f74 - End of configuration.
   [testng] [2024-04-12 07:35:42,467] [pool-1-thread-2] Initializing /data/pang/grating025k.dm2: 
   [testng] 07:35:42,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 07:35:42,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:35:42,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_07-35-42.log]
   [testng] 07:35:42,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@806b4cb - End of configuration.
   [testng] [2024-04-12 07:35:43,695] [pool-1-thread-12] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png: 
   [testng] [2024-04-12 07:35:43,699] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png: 
   [testng] [2024-04-12 07:35:43,703] [pool-1-thread-4] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2: 
   [testng] [2024-04-12 07:35:43,720] [pool-1-thread-11] Initializing /data/pang/signed: 
   [testng] [2024-04-12 07:35:43,732] [pool-1-thread-1] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png: 
   [testng] [2024-04-12 07:35:43,737] [pool-1-thread-2] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 954, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 9 seconds
Finished: SUCCESS