Started by upstream project "BIOFORMATS-test-repo" build number 263
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins9799741925660697373.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_41464_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 15:30:24,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 15:30:24,254 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 15:30:24,254 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 15:30:24,255 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 15:30:24,255 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 15:30:24,255 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 15:30:24,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 15:30:24,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 15:30:24,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 15:30:24,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 15:30:24,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 15:30:24,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 15:30:24,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 15:30:24,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 15:30:24,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 15:30:24,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 15:30:24,474 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 15:30:24,474 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 15:30:24,474 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 15:30:24,474 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 15:30:24,474 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 15:30:24,475 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 15:30:24,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 219 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-21 15:30:24,486] [main] java.version = 21
[testng] 15:30:24,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 15:30:24,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:30:24,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_15-30-24.log]
[testng] 15:30:24,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-11-21 15:30:24,558] [main] testng.directory = /data
[testng] [2024-11-21 15:30:24,558] [main] testng.configDirectory = /config
[testng] [2024-11-21 15:30:24,567] [main] testng.multiplier = 1.0
[testng] [2024-11-21 15:30:24,567] [main] testng.in-memory = false
[testng] [2024-11-21 15:30:24,567] [main] testng.allow-missing = false
[testng] [2024-11-21 15:30:24,567] [main] user.language = en
[testng] [2024-11-21 15:30:24,567] [main] user.country = ${user.country}
[testng] [2024-11-21 15:30:24,568] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-21 15:30:42,654] [main] ----------------------------------------
[testng] [2024-11-21 15:30:42,654] [main] Total files: 21
[testng] [2024-11-21 15:30:42,654] [main] Scan time: 18.086 s (861 ms/file)
[testng] [2024-11-21 15:30:42,654] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-21 15:31:10,674] [pool-1-thread-1] Initializing /data/stefan/001_q09.txt:
[testng] 15:31:10,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 15:31:10,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:31:10,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-21_15-31-10.log]
[testng] 15:31:10,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1442e585 - End of configuration.
[testng] [2024-11-21 15:31:12,180] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt:
[testng] 15:31:12,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 15:31:12,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:31:12,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-21_15-31-12.log]
[testng] 15:31:12,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65d78d88 - End of configuration.
[testng] [2024-11-21 15:31:13,043] [pool-1-thread-11] Initializing /data/stefan/001_q12.txt:
[testng] 15:31:13,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 15:31:13,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:31:13,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-21_15-31-13.log]
[testng] 15:31:13,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d85e6ba - End of configuration.
[testng] [2024-11-21 15:31:15,685] [pool-1-thread-10] Initializing /data/stefan/001_q11.txt:
[testng] 15:31:15,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 15:31:15,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:31:15,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-21_15-31-15.log]
[testng] 15:31:15,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1321b722 - End of configuration.
[testng] [2024-11-21 15:31:18,379] [pool-1-thread-9] Initializing /data/stefan/001_q07.txt:
[testng] 15:31:18,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 15:31:18,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:31:18,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-21_15-31-18.log]
[testng] 15:31:18,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2088d177 - End of configuration.
[testng] [2024-11-21 15:31:21,264] [pool-1-thread-8] Initializing /data/stefan/001_q06.txt:
[testng] 15:31:21,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 15:31:21,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:31:21,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-21_15-31-21.log]
[testng] 15:31:21,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55b5c72e - End of configuration.
[testng] [2024-11-21 15:31:22,189] [pool-1-thread-7] Initializing /data/stefan/001_q18.txt:
[testng] 15:31:22,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 15:31:22,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:31:22,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-21_15-31-22.log]
[testng] 15:31:22,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f66e9aa - End of configuration.
[testng] [2024-11-21 15:31:23,637] [pool-1-thread-6] Initializing /data/stefan/001_q04.txt:
[testng] 15:31:23,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 15:31:23,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:31:23,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-21_15-31-23.log]
[testng] 15:31:23,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b7b13db - End of configuration.
[testng] [2024-11-21 15:31:24,794] [pool-1-thread-5] Initializing /data/stefan/001_q05.txt:
[testng] 15:31:24,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 15:31:24,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:31:24,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-21_15-31-24.log]
[testng] 15:31:24,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@506768fc - End of configuration.
[testng] [2024-11-21 15:31:26,582] [pool-1-thread-4] Initializing /data/stefan/001_q03.txt:
[testng] 15:31:26,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 15:31:26,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:31:26,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_15-31-26.log]
[testng] 15:31:26,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@487c8651 - End of configuration.
[testng] [2024-11-21 15:31:28,281] [pool-1-thread-3] Initializing /data/stefan/001_q02.txt:
[testng] 15:31:28,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 15:31:28,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:31:28,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_15-31-28.log]
[testng] 15:31:28,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22188293 - End of configuration.
[testng] [2024-11-21 15:31:29,443] [pool-1-thread-2] Initializing /data/stefan/001_q08.txt:
[testng] 15:31:29,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 15:31:29,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:31:29,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-21_15-31-29.log]
[testng] 15:31:29,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8ac6e1 - End of configuration.
[testng] [2024-11-21 15:31:50,883] [pool-1-thread-3] Initializing /data/stefan/001_q16.txt:
[testng] [2024-11-21 15:31:52,336] [pool-1-thread-6] Initializing /data/stefan/001_q13.txt:
[testng] [2024-11-21 15:31:54,190] [pool-1-thread-4] Initializing /data/stefan/001_q01.txt:
[testng] [2024-11-21 15:31:55,723] [pool-1-thread-8] Initializing /data/stefan/001_q10.txt:
[testng] [2024-11-21 15:31:59,805] [pool-1-thread-7] Initializing /data/stefan/001_q15.txt:
[testng] [2024-11-21 15:32:02,051] [pool-1-thread-5] Initializing /data/stefan/001_q17.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 11 seconds
Finished: SUCCESS