Started by upstream project "BIOFORMATS-test-repo" build number 31
originally caused by:
Started by upstream project "Trigger" build number 35
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14897532838732885685.sh
+ '[' sis = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_4154_merge_ci -v /uod/idr/repos/curated/sis:/data -v /uod/idr-scratch/merge-ci/curated/sis:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 07:44:39,402 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 07:44:39,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 07:44:39,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:44:39,405 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:44:39,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 07:44:39,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 07:44:39,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 07:44:39,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:44:39,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:44:39,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 07:44:39,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 07:44:39,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 07:44:39,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 07:44:39,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 07:44:39,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 07:44:39,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 07:44:39,740 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 07:44:39,741 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 07:44:39,741 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 07:44:39,741 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 07:44:39,741 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 07:44:39,742 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 07:44:39,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 336 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-12 07:44:39,754] [main] java.version = 1.8.0_342
[testng] 07:44:39,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:44:39,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:39,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_07-44-39.log]
[testng] 07:44:39,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-12 07:44:39,823] [main] testng.directory = /data
[testng] [2024-04-12 07:44:39,823] [main] testng.configDirectory = /config
[testng] [2024-04-12 07:44:39,853] [main] testng.multiplier = 1.0
[testng] [2024-04-12 07:44:39,855] [main] testng.in-memory = false
[testng] [2024-04-12 07:44:39,855] [main] testng.allow-missing = false
[testng] [2024-04-12 07:44:39,855] [main] user.language = en
[testng] [2024-04-12 07:44:39,855] [main] user.country = ${user.country}
[testng] [2024-04-12 07:44:39,855] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-12 07:44:40,927] [main] ----------------------------------------
[testng] [2024-04-12 07:44:40,927] [main] Total files: 13
[testng] [2024-04-12 07:44:40,927] [main] Scan time: 1.071 s (82 ms/file)
[testng] [2024-04-12 07:44:40,927] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-12 07:44:42,930] [pool-1-thread-1] Initializing /data/dimitri/ELN-ARM_00049_38.tif:
[testng] 07:44:42,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 07:44:42,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:42,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_07-44-42.log]
[testng] 07:44:42,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@740170f2 - End of configuration.
[testng] [2024-04-12 07:44:43,006] [pool-1-thread-11] Initializing /data/glen/CG 3.31 10K.tif:
[testng] 07:44:43,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 07:44:43,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:43,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_07-44-43.log]
[testng] 07:44:43,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68f2261a - End of configuration.
[testng] [2024-04-12 07:44:43,120] [pool-1-thread-10] Initializing /data/glen/L1468a-2_4_15000X.tif:
[testng] 07:44:43,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 07:44:43,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:43,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_07-44-43.log]
[testng] 07:44:43,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b800d8 - End of configuration.
[testng] [2024-04-12 07:44:43,213] [pool-1-thread-9] Initializing /data/glen/L1500k P_3_7500X.tif:
[testng] 07:44:43,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 07:44:43,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:43,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_07-44-43.log]
[testng] 07:44:43,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15d2e00a - End of configuration.
[testng] [2024-04-12 07:44:43,284] [pool-1-thread-8] Initializing /data/glen/L1500k P_4_7500X.tif:
[testng] 07:44:43,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 07:44:43,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:43,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_07-44-43.log]
[testng] 07:44:43,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3face4a5 - End of configuration.
[testng] [2024-04-12 07:44:43,342] [pool-1-thread-7] Initializing /data/pki/Tv2.tif:
[testng] 07:44:43,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 07:44:43,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:43,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_07-44-43.log]
[testng] 07:44:43,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5abceb2e - End of configuration.
[testng] [2024-04-12 07:44:43,410] [pool-1-thread-6] Initializing /data/strand/FS44-1-254.tif:
[testng] 07:44:43,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 07:44:43,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:43,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_07-44-43.log]
[testng] 07:44:43,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@320b18fd - End of configuration.
[testng] [2024-04-12 07:44:43,468] [pool-1-thread-5] Initializing /data/glen/CG 3.31 20K.tif:
[testng] 07:44:43,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 07:44:43,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:43,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_07-44-43.log]
[testng] 07:44:43,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7066147c - End of configuration.
[testng] [2024-04-12 07:44:43,546] [pool-1-thread-4] Initializing /data/glen/CG 3.31 15K.tif:
[testng] 07:44:43,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 07:44:43,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:43,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_07-44-43.log]
[testng] 07:44:43,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e2c4c0 - End of configuration.
[testng] [2024-04-12 07:44:43,596] [pool-1-thread-3] Initializing /data/russell/Arbacia 2week ADL.tif:
[testng] 07:44:43,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 07:44:43,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:43,597 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_07-44-43.log]
[testng] 07:44:43,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@375f7b74 - End of configuration.
[testng] [2024-04-12 07:44:43,645] [pool-1-thread-2] Initializing /data/strand/MIA.tif:
[testng] 07:44:43,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 07:44:43,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:43,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_07-44-43.log]
[testng] 07:44:43,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e58bd0b - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 14 seconds
Finished: SUCCESS