Started by upstream project "BIOFORMATS-test-repo" build number 263 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins14044489582721417216.sh + '[' cellr = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41598_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 20:41:22,369 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 20:41:22,371 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 20:41:22,371 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 20:41:22,371 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 20:41:22,372 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 20:41:22,372 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 20:41:22,372 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 20:41:22,372 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 20:41:22,373 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 20:41:22,373 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 20:41:22,374 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 20:41:22,374 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 20:41:22,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 20:41:22,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 20:41:22,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 20:41:22,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 20:41:22,550 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 20:41:22,550 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 20:41:22,550 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 20:41:22,551 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 20:41:22,551 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 20:41:22,552 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 20:41:22,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 179 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-21 20:41:22,561] [main] java.version = 21 [testng] 20:41:22,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 20:41:22,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:41:22,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_20-41-22.log] [testng] 20:41:22,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-21 20:41:22,605] [main] testng.directory = /data [testng] [2024-11-21 20:41:22,605] [main] testng.configDirectory = /config [testng] [2024-11-21 20:41:22,613] [main] testng.multiplier = 1.0 [testng] [2024-11-21 20:41:22,613] [main] testng.in-memory = false [testng] [2024-11-21 20:41:22,613] [main] testng.allow-missing = false [testng] [2024-11-21 20:41:22,613] [main] user.language = en [testng] [2024-11-21 20:41:22,613] [main] user.country = ${user.country} [testng] [2024-11-21 20:41:22,613] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-21 20:43:12,172] [main] ---------------------------------------- [testng] [2024-11-21 20:43:12,172] [main] Total files: 256 [testng] [2024-11-21 20:43:12,173] [main] Scan time: 109.558 s (427 ms/file) [testng] [2024-11-21 20:43:12,173] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-21 20:48:20,481] [pool-1-thread-1] Initializing /data/qa-17107/example2/example2_d.mtb: [testng] 20:48:20,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 20:48:20,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:48:20,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-21_20-48-20.log] [testng] 20:48:20,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dd7674a - End of configuration. [testng] [2024-11-21 20:48:21,428] [pool-1-thread-12] Initializing /data/viktorie/Structure.jpg: [testng] 20:48:21,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 20:48:21,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:48:21,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-21_20-48-21.log] [testng] 20:48:21,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4301436a - End of configuration. [testng] [2024-11-21 20:48:21,641] [pool-1-thread-11] Initializing /data/qa-17107/plain/Plain_d.mtb: [testng] 20:48:21,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 20:48:21,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:48:21,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-21_20-48-21.log] [testng] 20:48:21,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@121fb78d - End of configuration. [testng] [2024-11-21 20:48:22,792] [pool-1-thread-10] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: [testng] 20:48:22,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 20:48:22,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:48:22,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-21_20-48-22.log] [testng] 20:48:22,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3455169a - End of configuration. [testng] [2024-11-21 20:48:23,528] [pool-1-thread-9] Initializing /data/viktorie/2Channels.tif: [testng] 20:48:23,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 20:48:23,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:48:23,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-21_20-48-23.log] [testng] 20:48:23,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf4dc5c - End of configuration. [testng] [2024-11-21 20:48:25,793] [pool-1-thread-8] Initializing /data/viktorie/test/test_d.mtb: [testng] 20:48:25,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 20:48:25,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:48:25,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-21_20-48-25.log] [testng] 20:48:25,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c29bca1 - End of configuration. [testng] [2024-11-21 20:48:26,548] [pool-1-thread-7] Initializing /data/colin/07-06-21/07-06-21_d.mtb: [testng] 20:48:26,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 20:48:26,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:48:26,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-21_20-48-26.log] [testng] 20:48:26,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@683c58a0 - End of configuration. [testng] [2024-11-21 20:48:27,640] [pool-1-thread-6] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: [testng] 20:48:27,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 20:48:27,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:48:27,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-21_20-48-27.log] [testng] 20:48:27,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2190d33f - End of configuration. [testng] [2024-11-21 20:48:28,777] [pool-1-thread-5] Initializing /data/viktorie/090902/090902_d.mtb: [testng] 20:48:28,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 20:48:28,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:48:28,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-21_20-48-28.log] [testng] 20:48:28,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d1eafe1 - End of configuration. [testng] [2024-11-21 20:48:29,572] [pool-1-thread-4] Initializing /data/colin/08-10-09/08-10-09_d.mtb: [testng] 20:48:29,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 20:48:29,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:48:29,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_20-48-29.log] [testng] 20:48:29,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@771e2ed7 - End of configuration. [testng] [2024-11-21 20:48:34,266] [pool-1-thread-3] Initializing /data/clare/set_27_on_d.mtb: [testng] 20:48:34,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 20:48:34,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:48:34,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_20-48-34.log] [testng] 20:48:34,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24879ec0 - End of configuration. [testng] [2024-11-21 20:48:35,609] [pool-1-thread-2] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: [testng] 20:48:35,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 20:48:35,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:48:35,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-21_20-48-35.log] [testng] 20:48:35,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33a3493d - End of configuration. [testng] [2024-11-21 20:48:44,070] [pool-1-thread-12] Initializing /data/kees/Mariaelena_d.mtb: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 minutes 40 seconds Finished: SUCCESS