Started by upstream project "BIOFORMATS-test-repo" build number 263
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins17778295102280104243.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_41606_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 20:58:27,768 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 20:58:27,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 20:58:27,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 20:58:27,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 20:58:27,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 20:58:27,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 20:58:27,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 20:58:27,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 20:58:27,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 20:58:27,772 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 20:58:27,773 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 20:58:27,773 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 20:58:27,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 20:58:27,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 20:58:27,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 20:58:27,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 20:58:27,948 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 20:58:27,948 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 20:58:27,948 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 20:58:27,948 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 20:58:27,948 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 20:58:27,949 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 20:58:27,949 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 177 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-21 20:58:27,958] [main] java.version = 21
[testng] 20:58:27,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 20:58:27,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:58:27,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_20-58-27.log]
[testng] 20:58:28,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-11-21 20:58:28,002] [main] testng.directory = /data
[testng] [2024-11-21 20:58:28,003] [main] testng.configDirectory = /config
[testng] [2024-11-21 20:58:28,011] [main] testng.multiplier = 1.0
[testng] [2024-11-21 20:58:28,011] [main] testng.in-memory = false
[testng] [2024-11-21 20:58:28,012] [main] testng.allow-missing = false
[testng] [2024-11-21 20:58:28,012] [main] user.language = en
[testng] [2024-11-21 20:58:28,012] [main] user.country = ${user.country}
[testng] [2024-11-21 20:58:28,012] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-21 20:58:32,609] [main] ----------------------------------------
[testng] [2024-11-21 20:58:32,609] [main] Total files: 22
[testng] [2024-11-21 20:58:32,610] [main] Scan time: 4.597 s (208 ms/file)
[testng] [2024-11-21 20:58:32,610] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-21 20:58:53,766] [pool-1-thread-1] Initializing /data/converted/dub01.seq:
[testng] 20:58:53,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 20:58:53,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:58:53,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-21_20-58-53.log]
[testng] 20:58:53,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@693fab38 - End of configuration.
[testng] [2024-11-21 20:58:54,325] [pool-1-thread-12] Initializing /data/converted/mitosis-test.tif:
[testng] 20:58:54,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 20:58:54,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:58:54,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-21_20-58-54.log]
[testng] 20:58:54,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78bd2ab7 - End of configuration.
[testng] [2024-11-21 20:58:55,683] [pool-1-thread-11] Initializing /data/converted/clown8c.ipw:
[testng] 20:58:55,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 20:58:55,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:58:55,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-21_20-58-55.log]
[testng] 20:58:55,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ddf9bb6 - End of configuration.
[testng] [2024-11-21 20:58:56,216] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 20:58:56,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 20:58:56,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:58:56,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-21_20-58-56.log]
[testng] 20:58:56,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b535d62 - End of configuration.
[testng] [2024-11-21 20:58:56,792] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 20:58:56,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 20:58:56,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:58:56,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-21_20-58-56.log]
[testng] 20:58:56,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@612dbea7 - End of configuration.
[testng] [2024-11-21 20:58:57,313] [pool-1-thread-8] Initializing /data/converted/clown.seq:
[testng] 20:58:57,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 20:58:57,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:58:57,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-21_20-58-57.log]
[testng] 20:58:57,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2396cf10 - End of configuration.
[testng] [2024-11-21 20:58:57,857] [pool-1-thread-7] Initializing /data/converted/mitosis-test.ipw:
[testng] 20:58:57,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 20:58:57,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:58:57,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-21_20-58-57.log]
[testng] 20:58:57,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dbcf442 - End of configuration.
[testng] [2024-11-21 20:58:58,394] [pool-1-thread-6] Initializing /data/samples/PROBE.TIF:
[testng] 20:58:58,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 20:58:58,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:58:58,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-21_20-58-58.log]
[testng] 20:58:58,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@232b3191 - End of configuration.
[testng] [2024-11-21 20:58:58,933] [pool-1-thread-5] Initializing /data/xiuwen/head2.seq:
[testng] 20:58:58,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 20:58:58,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:58:58,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-21_20-58-58.log]
[testng] 20:58:58,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c88d79d - End of configuration.
[testng] [2024-11-21 20:58:59,558] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] 20:58:59,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 20:58:59,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:58:59,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_20-58-59.log]
[testng] 20:58:59,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@443e61b1 - End of configuration.
[testng] [2024-11-21 20:59:00,927] [pool-1-thread-3] Initializing /data/alex/AFAset0003.ips:
[testng] 20:59:00,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 20:59:00,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:59:00,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_20-59-00.log]
[testng] 20:59:00,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@401df70b - End of configuration.
[testng] [2024-11-21 20:59:01,481] [pool-1-thread-2] Initializing /data/samples/HEART.SEQ:
[testng] 20:59:01,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 20:59:01,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 20:59:01,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-21_20-59-01.log]
[testng] 20:59:01,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36ab2a2a - End of configuration.
[testng] [2024-11-21 20:59:07,688] [pool-1-thread-11] Initializing /data/converted/clown8c.tif:
[testng] [2024-11-21 20:59:09,018] [pool-1-thread-2] Initializing /data/converted/clown.ipw:
[testng] [2024-11-21 20:59:09,557] [pool-1-thread-6] Initializing /data/samples/TISSUE.TIF:
[testng] [2024-11-21 20:59:10,878] [pool-1-thread-7] Initializing /data/converted/dub01.pic:
[testng] [2024-11-21 20:59:11,366] [pool-1-thread-8] Initializing /data/converted/clown8c.seq:
[testng] [2024-11-21 20:59:12,040] [pool-1-thread-9] Initializing /data/converted/clown.tif:
[testng] [2024-11-21 20:59:12,852] [pool-1-thread-10] Initializing /data/converted/mitosis-test.seq:
[testng] [2024-11-21 20:59:13,494] [pool-1-thread-1] Initializing /data/converted/dub01.ipw:
[testng] [2024-11-21 20:59:14,092] [pool-1-thread-5] Initializing /data/samples/FLDUAL.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 3 minutes 35 seconds
Finished: SUCCESS