Started by upstream project "BIOFORMATS-test-repo" build number 264
originally caused by:
Started by upstream project "Trigger" build number 287
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins8525706409520653436.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_41628_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:24:25,441 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:24:25,442 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:24:25,443 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:24:25,444 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:24:25,444 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:24:25,444 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:24:25,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:24:25,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:24:25,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:24:25,446 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:24:25,446 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:24:25,446 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:24:25,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:24:25,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:24:25,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:24:25,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:24:25,712 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:24:25,712 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:24:25,712 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:24:25,713 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:24:25,713 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:24:25,714 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:24:25,714 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 269 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-22 00:24:25,724] [main] java.version = 1.8.0_342
[testng] 00:24:25,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:24:25,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:25,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-22_00-24-25.log]
[testng] 00:24:25,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-22 00:24:25,790] [main] testng.directory = /data
[testng] [2024-11-22 00:24:25,790] [main] testng.configDirectory = /config
[testng] [2024-11-22 00:24:25,808] [main] testng.multiplier = 1.0
[testng] [2024-11-22 00:24:25,809] [main] testng.in-memory = false
[testng] [2024-11-22 00:24:25,809] [main] testng.allow-missing = false
[testng] [2024-11-22 00:24:25,809] [main] user.language = en
[testng] [2024-11-22 00:24:25,809] [main] user.country = ${user.country}
[testng] [2024-11-22 00:24:25,809] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-22 00:24:54,914] [main] ----------------------------------------
[testng] [2024-11-22 00:24:54,914] [main] Total files: 21
[testng] [2024-11-22 00:24:54,914] [main] Scan time: 29.105 s (1385 ms/file)
[testng] [2024-11-22 00:24:54,915] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-22 00:25:39,746] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt:
[testng] 00:25:39,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:25:39,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:39,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-22_00-25-39.log]
[testng] 00:25:39,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60ebf259 - End of configuration.
[testng] [2024-11-22 00:25:41,399] [pool-1-thread-12] Initializing /data/stefan/001_q11.txt:
[testng] 00:25:41,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:25:41,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:41,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-22_00-25-41.log]
[testng] 00:25:41,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4175039f - End of configuration.
[testng] [2024-11-22 00:25:44,135] [pool-1-thread-11] Initializing /data/stefan/001_q03.txt:
[testng] 00:25:44,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:25:44,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:44,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-22_00-25-44.log]
[testng] 00:25:44,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6072df87 - End of configuration.
[testng] [2024-11-22 00:25:45,505] [pool-1-thread-10] Initializing /data/stefan/001_q07.txt:
[testng] 00:25:45,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:25:45,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:45,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-22_00-25-45.log]
[testng] 00:25:45,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e896bbb - End of configuration.
[testng] [2024-11-22 00:25:47,988] [pool-1-thread-9] Initializing /data/stefan/001_q13.txt:
[testng] 00:25:47,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:25:47,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:47,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-22_00-25-47.log]
[testng] 00:25:47,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@346ca40f - End of configuration.
[testng] [2024-11-22 00:25:49,374] [pool-1-thread-8] Initializing /data/stefan/001_q18.txt:
[testng] 00:25:49,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:25:49,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:49,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-22_00-25-49.log]
[testng] 00:25:49,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c981d7a - End of configuration.
[testng] [2024-11-22 00:25:50,867] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt:
[testng] 00:25:50,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:25:50,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:50,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-22_00-25-50.log]
[testng] 00:25:50,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66cf71a8 - End of configuration.
[testng] [2024-11-22 00:25:52,199] [pool-1-thread-6] Initializing /data/stefan/001_q15.txt:
[testng] 00:25:52,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:25:52,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:52,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-22_00-25-52.log]
[testng] 00:25:52,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34f17f32 - End of configuration.
[testng] [2024-11-22 00:25:53,517] [pool-1-thread-5] Initializing /data/stefan/001_q10.txt:
[testng] 00:25:53,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:25:53,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:53,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-22_00-25-53.log]
[testng] 00:25:53,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12711b38 - End of configuration.
[testng] [2024-11-22 00:25:57,547] [pool-1-thread-4] Initializing /data/stefan/001_q05.txt:
[testng] 00:25:57,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:25:57,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:57,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-22_00-25-57.log]
[testng] 00:25:57,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b823c83 - End of configuration.
[testng] [2024-11-22 00:25:59,896] [pool-1-thread-3] Initializing /data/stefan/001_q09.txt:
[testng] 00:25:59,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:25:59,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:59,896 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-22_00-25-59.log]
[testng] 00:25:59,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@593fde62 - End of configuration.
[testng] [2024-11-22 00:26:03,682] [pool-1-thread-2] Initializing /data/stefan/001_q06.txt:
[testng] 00:26:03,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:26:03,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:03,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-22_00-26-03.log]
[testng] 00:26:03,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@87dd2cc - End of configuration.
[testng] [2024-11-22 00:26:28,350] [pool-1-thread-11] Initializing /data/stefan/001_q14.txt:
[testng] [2024-11-22 00:26:30,870] [pool-1-thread-1] Initializing /data/stefan/001_q16.txt:
[testng] [2024-11-22 00:26:34,543] [pool-1-thread-7] Initializing /data/stefan/001_q08.txt:
[testng] [2024-11-22 00:26:38,450] [pool-1-thread-6] Initializing /data/stefan/001_q12.txt:
[testng] [2024-11-22 00:26:43,627] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt:
[testng] [2024-11-22 00:26:45,473] [pool-1-thread-9] Initializing /data/stefan/001_q17.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 54 seconds
Finished: SUCCESS