Started by upstream project "BIOFORMATS-test-repo" build number 265
originally caused by:
Started by upstream project "Trigger" build number 288
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10745240818081741255.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_41934_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 05:59:49,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:59:49,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 05:59:49,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:59:49,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:59:49,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:59:49,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:59:49,289 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:59:49,289 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:59:49,289 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:59:49,290 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:59:49,290 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:59:49,290 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:59:49,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:59:49,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:59:49,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:59:49,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:59:49,482 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:59:49,483 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:59:49,483 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:59:49,483 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:59:49,483 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 05:59:49,484 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 05:59:49,484 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-23 05:59:49,492] [main] java.version = 11.0.16
[testng] 05:59:49,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:59:49,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:59:49,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-23_05-59-49.log]
[testng] 05:59:49,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-23 05:59:49,540] [main] testng.directory = /data
[testng] [2024-11-23 05:59:49,540] [main] testng.configDirectory = /config
[testng] [2024-11-23 05:59:49,550] [main] testng.multiplier = 1.0
[testng] [2024-11-23 05:59:49,551] [main] testng.in-memory = false
[testng] [2024-11-23 05:59:49,551] [main] testng.allow-missing = false
[testng] [2024-11-23 05:59:49,551] [main] user.language = en
[testng] [2024-11-23 05:59:49,551] [main] user.country = ${user.country}
[testng] [2024-11-23 05:59:49,551] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-23 05:59:55,608] [main] ----------------------------------------
[testng] [2024-11-23 05:59:55,608] [main] Total files: 22
[testng] [2024-11-23 05:59:55,608] [main] Scan time: 6.057 s (275 ms/file)
[testng] [2024-11-23 05:59:55,609] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-23 06:00:22,991] [pool-1-thread-1] Initializing /data/converted/clown8c.tif:
[testng] 06:00:22,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:00:22,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:22,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-23_06-00-22.log]
[testng] 06:00:22,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b7a6e6d - End of configuration.
[testng] [2024-11-23 06:00:24,876] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips:
[testng] 06:00:24,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:00:24,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:24,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-23_06-00-24.log]
[testng] 06:00:24,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ec9bcf4 - End of configuration.
[testng] [2024-11-23 06:00:25,692] [pool-1-thread-11] Initializing /data/converted/clown8c.ipw:
[testng] 06:00:25,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:00:25,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:25,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-23_06-00-25.log]
[testng] 06:00:25,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@459a1ca - End of configuration.
[testng] [2024-11-23 06:00:26,466] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 06:00:26,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:00:26,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:26,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-23_06-00-26.log]
[testng] 06:00:26,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54047901 - End of configuration.
[testng] [2024-11-23 06:00:27,274] [pool-1-thread-9] Initializing /data/converted/mitosis-test.tif:
[testng] 06:00:27,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:00:27,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:27,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-23_06-00-27.log]
[testng] 06:00:27,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@338132bf - End of configuration.
[testng] [2024-11-23 06:00:29,209] [pool-1-thread-8] Initializing /data/converted/dub01.pic:
[testng] 06:00:29,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:00:29,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:29,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-23_06-00-29.log]
[testng] 06:00:29,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c4b5be6 - End of configuration.
[testng] [2024-11-23 06:00:29,959] [pool-1-thread-7] Initializing /data/converted/dub01.ipw:
[testng] 06:00:29,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:00:29,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:29,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-23_06-00-29.log]
[testng] 06:00:29,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20abc31a - End of configuration.
[testng] [2024-11-23 06:00:30,708] [pool-1-thread-6] Initializing /data/converted/clown.ipw:
[testng] 06:00:30,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:00:30,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:30,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-23_06-00-30.log]
[testng] 06:00:30,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7702195c - End of configuration.
[testng] [2024-11-23 06:00:31,469] [pool-1-thread-5] Initializing /data/samples/PROBE.TIF:
[testng] 06:00:31,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:00:31,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:31,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-23_06-00-31.log]
[testng] 06:00:31,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250a291c - End of configuration.
[testng] [2024-11-23 06:00:32,251] [pool-1-thread-4] Initializing /data/converted/mitosis-test.seq:
[testng] 06:00:32,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:00:32,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:32,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-23_06-00-32.log]
[testng] 06:00:32,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eccac63 - End of configuration.
[testng] [2024-11-23 06:00:33,039] [pool-1-thread-3] Initializing /data/samples/TISSUE.TIF:
[testng] 06:00:33,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:00:33,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:33,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-23_06-00-33.log]
[testng] 06:00:33,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dfa18 - End of configuration.
[testng] [2024-11-23 06:00:34,956] [pool-1-thread-2] Initializing /data/samples/HEART.SEQ:
[testng] 06:00:34,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:00:34,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:34,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-23_06-00-34.log]
[testng] 06:00:34,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b22364f - End of configuration.
[testng] [2024-11-23 06:00:43,995] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-11-23 06:00:46,062] [pool-1-thread-6] Initializing /data/converted/mitosis-test.ipw:
[testng] [2024-11-23 06:00:47,032] [pool-1-thread-8] Initializing /data/converted/clown.tif:
[testng] [2024-11-23 06:00:47,846] [pool-1-thread-7] Initializing /data/samples/FLDUAL.TIF:
[testng] [2024-11-23 06:00:49,839] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] [2024-11-23 06:00:50,643] [pool-1-thread-2] Initializing /data/converted/dub01.seq:
[testng] [2024-11-23 06:00:51,439] [pool-1-thread-5] Initializing /data/converted/clown8c.seq:
[testng] [2024-11-23 06:00:52,247] [pool-1-thread-10] Initializing /data/xiuwen/head2.seq:
[testng] [2024-11-23 06:00:56,397] [pool-1-thread-1] Initializing /data/converted/clown.seq:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 4 minutes 44 seconds
Finished: SUCCESS