Started by upstream project "BIOFORMATS-test-repo" build number 266
originally caused by:
Started by upstream project "Trigger" build number 289
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins14141233422886625247.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42098_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 05:50:34,702 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:50:34,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 05:50:34,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:50:34,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:50:34,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:50:34,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:50:34,705 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:50:34,705 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:50:34,706 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:50:34,706 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:50:34,707 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:50:34,707 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:50:34,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:50:34,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:50:34,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:50:34,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:50:34,883 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:50:34,883 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:50:34,884 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:50:34,884 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:50:34,884 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 05:50:34,885 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 05:50:34,885 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 179 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-24 05:50:34,893] [main] java.version = 17.0.2
[testng] 05:50:34,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:50:34,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:50:34,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-24_05-50-34.log]
[testng] 05:50:34,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-11-24 05:50:34,938] [main] testng.directory = /data
[testng] [2024-11-24 05:50:34,938] [main] testng.configDirectory = /config
[testng] [2024-11-24 05:50:34,946] [main] testng.multiplier = 1.0
[testng] [2024-11-24 05:50:34,947] [main] testng.in-memory = false
[testng] [2024-11-24 05:50:34,947] [main] testng.allow-missing = false
[testng] [2024-11-24 05:50:34,947] [main] user.language = en
[testng] [2024-11-24 05:50:34,947] [main] user.country = ${user.country}
[testng] [2024-11-24 05:50:34,947] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-24 05:50:40,521] [main] ----------------------------------------
[testng] [2024-11-24 05:50:40,522] [main] Total files: 22
[testng] [2024-11-24 05:50:40,522] [main] Scan time: 5.574 s (253 ms/file)
[testng] [2024-11-24 05:50:40,522] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-24 05:51:04,033] [pool-1-thread-1] Initializing /data/converted/clown.ipw:
[testng] 05:51:04,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:51:04,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:04,034 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-24_05-51-04.log]
[testng] 05:51:04,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26a7f194 - End of configuration.
[testng] [2024-11-24 05:51:04,689] [pool-1-thread-12] Initializing /data/converted/dub01.seq:
[testng] 05:51:04,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:51:04,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:04,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-24_05-51-04.log]
[testng] 05:51:04,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2218b4e0 - End of configuration.
[testng] [2024-11-24 05:51:05,378] [pool-1-thread-11] Initializing /data/samples/FLDUAL.TIF:
[testng] 05:51:05,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:51:05,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:05,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-24_05-51-05.log]
[testng] 05:51:05,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50f6351b - End of configuration.
[testng] [2024-11-24 05:51:06,998] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 05:51:06,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:51:06,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:06,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-24_05-51-06.log]
[testng] 05:51:06,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@170e8565 - End of configuration.
[testng] [2024-11-24 05:51:07,630] [pool-1-thread-9] Initializing /data/converted/clown8c.seq:
[testng] 05:51:07,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:51:07,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:07,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-24_05-51-07.log]
[testng] 05:51:07,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@774208af - End of configuration.
[testng] [2024-11-24 05:51:08,284] [pool-1-thread-8] Initializing /data/xiuwen/head2.seq:
[testng] 05:51:08,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:51:08,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:08,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-24_05-51-08.log]
[testng] 05:51:08,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26b86d93 - End of configuration.
[testng] [2024-11-24 05:51:09,044] [pool-1-thread-7] Initializing /data/converted/mitosis-test.ipw:
[testng] 05:51:09,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:51:09,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:09,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-24_05-51-09.log]
[testng] 05:51:09,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3da10a4e - End of configuration.
[testng] [2024-11-24 05:51:09,778] [pool-1-thread-6] Initializing /data/converted/clown8c.tif:
[testng] 05:51:09,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:51:09,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:09,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-24_05-51-09.log]
[testng] 05:51:09,779 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a13c7 - End of configuration.
[testng] [2024-11-24 05:51:11,408] [pool-1-thread-5] Initializing /data/converted/dub01.ipw:
[testng] 05:51:11,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:51:11,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:11,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-24_05-51-11.log]
[testng] 05:51:11,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250475be - End of configuration.
[testng] [2024-11-24 05:51:12,089] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 05:51:12,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:51:12,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:12,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-24_05-51-12.log]
[testng] 05:51:12,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32147c9b - End of configuration.
[testng] [2024-11-24 05:51:12,759] [pool-1-thread-3] Initializing /data/converted/dub01.pic:
[testng] 05:51:12,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:51:12,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:12,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-24_05-51-12.log]
[testng] 05:51:12,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e883dad - End of configuration.
[testng] [2024-11-24 05:51:13,422] [pool-1-thread-2] Initializing /data/converted/mitosis-test.seq:
[testng] 05:51:13,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:51:13,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:13,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-24_05-51-13.log]
[testng] 05:51:13,423 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ee9d2a9 - End of configuration.
[testng] [2024-11-24 05:51:21,341] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-11-24 05:51:23,003] [pool-1-thread-1] Initializing /data/converted/clown.tif:
[testng] [2024-11-24 05:51:23,659] [pool-1-thread-3] Initializing /data/samples/PROBE.TIF:
[testng] [2024-11-24 05:51:24,361] [pool-1-thread-9] Initializing /data/converted/clown.seq:
[testng] [2024-11-24 05:51:25,061] [pool-1-thread-5] Initializing /data/samples/HEART.SEQ:
[testng] [2024-11-24 05:51:25,719] [pool-1-thread-2] Initializing /data/converted/mitosis-test.tif:
[testng] [2024-11-24 05:51:27,405] [pool-1-thread-10] Initializing /data/converted/clown8c.ipw:
[testng] [2024-11-24 05:51:28,025] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips:
[testng] [2024-11-24 05:51:28,737] [pool-1-thread-4] Initializing /data/samples/TISSUE.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 4 minutes 39 seconds
Finished: SUCCESS