Started by upstream project "BIOFORMATS-test-repo" build number 267
originally caused by:
Started by upstream project "Trigger" build number 290
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins12232232311607040528.sh
+ '[' fluoview = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42203_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 04:05:30,826 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:05:30,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 04:05:30,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:05:30,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:05:30,829 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:05:30,829 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:05:30,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:05:30,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:05:30,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:05:30,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:05:30,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:05:30,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:05:31,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:05:31,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:05:31,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:05:31,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:05:31,090 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:05:31,090 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:05:31,090 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:05:31,090 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:05:31,091 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 04:05:31,091 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 04:05:31,091 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 262 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-25 04:05:31,101] [main] java.version = 1.8.0_342
[testng] 04:05:31,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:05:31,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:05:31,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-25_04-05-31.log]
[testng] 04:05:31,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-25 04:05:31,153] [main] testng.directory = /data
[testng] [2024-11-25 04:05:31,153] [main] testng.configDirectory = /config
[testng] [2024-11-25 04:05:31,165] [main] testng.multiplier = 1.0
[testng] [2024-11-25 04:05:31,165] [main] testng.in-memory = false
[testng] [2024-11-25 04:05:31,165] [main] testng.allow-missing = false
[testng] [2024-11-25 04:05:31,165] [main] user.language = fr
[testng] [2024-11-25 04:05:31,165] [main] user.country = FR
[testng] [2024-11-25 04:05:31,165] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-25 04:05:35,454] [main] ----------------------------------------
[testng] [2024-11-25 04:05:35,454] [main] Total files: 14
[testng] [2024-11-25 04:05:35,454] [main] Scan time: 4.289 s (306 ms/file)
[testng] [2024-11-25 04:05:35,455] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-25 04:06:06,186] [pool-1-thread-1] Initializing /data/shalin/40xNA0.6-512x512.tif:
[testng] 04:06:06,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:06:06,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:06,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-25_04-06-06.log]
[testng] 04:06:06,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@442625f4 - End of configuration.
[testng] [2024-11-25 04:06:07,615] [pool-1-thread-12] Initializing /data/timg/eric-one-3d.tif:
[testng] 04:06:07,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:06:07,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:07,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-25_04-06-07.log]
[testng] 04:06:07,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27bf01fc - End of configuration.
[testng] [2024-11-25 04:06:09,027] [pool-1-thread-11] Initializing /data/brian/DBTRG 2X 1a-1.tif:
[testng] 04:06:09,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:06:09,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:09,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-25_04-06-09.log]
[testng] 04:06:09,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e4e9635 - End of configuration.
[testng] [2024-11-25 04:06:10,615] [pool-1-thread-10] Initializing /data/timg/E1-v2(11 som).tif:
[testng] 04:06:10,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:06:10,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:10,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-25_04-06-10.log]
[testng] 04:06:10,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fc1e1a9 - End of configuration.
[testng] [2024-11-25 04:06:12,077] [pool-1-thread-9] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif:
[testng] 04:06:12,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:06:12,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:12,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-25_04-06-12.log]
[testng] 04:06:12,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c592240 - End of configuration.
[testng] [2024-11-25 04:06:13,466] [pool-1-thread-8] Initializing /data/aaron/olympus_fv500.tif:
[testng] 04:06:13,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:06:13,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:13,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-25_04-06-13.log]
[testng] 04:06:13,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12d8ebe0 - End of configuration.
[testng] [2024-11-25 04:06:14,814] [pool-1-thread-7] Initializing /data/timg/eric-three.tif:
[testng] 04:06:14,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:06:14,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:14,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-25_04-06-14.log]
[testng] 04:06:14,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20ed18e0 - End of configuration.
[testng] [2024-11-25 04:06:16,080] [pool-1-thread-6] Initializing /data/timg/LiveTwo.tif:
[testng] 04:06:16,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:06:16,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:16,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-25_04-06-16.log]
[testng] 04:06:16,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1196365c - End of configuration.
[testng] [2024-11-25 04:06:17,437] [pool-1-thread-5] Initializing /data/timg/LiveThree-xyzt.tif:
[testng] 04:06:17,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:06:17,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:17,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-25_04-06-17.log]
[testng] 04:06:17,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cec00a3 - End of configuration.
[testng] [2024-11-25 04:06:18,745] [pool-1-thread-4] Initializing /data/timg/LiveOne.tif:
[testng] 04:06:18,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:06:18,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:18,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-25_04-06-18.log]
[testng] 04:06:18,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a96feed - End of configuration.
[testng] [2024-11-25 04:06:20,003] [pool-1-thread-3] Initializing /data/timg/eric-three-projection.tif:
[testng] 04:06:20,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:06:20,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:20,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-25_04-06-20.log]
[testng] 04:06:20,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7534c9eb - End of configuration.
[testng] [2024-11-25 04:06:21,155] [pool-1-thread-2] Initializing /data/timg/eric-one.tif:
[testng] 04:06:21,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:06:21,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:21,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-25_04-06-21.log]
[testng] 04:06:21,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2936a74 - End of configuration.
[testng] [2024-11-25 04:06:34,649] [pool-1-thread-4] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 21 seconds
Finished: SUCCESS