Started by upstream project "BIOFORMATS-test-repo" build number 267
originally caused by:
Started by upstream project "Trigger" build number 290
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1184279304295025482.sh
+ '[' zeiss-tiff = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42233_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 05:05:38,744 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:05:38,746 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 05:05:38,746 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:05:38,747 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:05:38,747 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:05:38,747 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:05:38,747 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:05:38,747 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:05:38,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:05:38,748 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:05:38,748 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:05:38,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:05:38,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:05:38,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:05:39,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:05:39,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:05:39,025 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:05:39,025 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:05:39,025 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:05:39,025 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:05:39,026 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 05:05:39,026 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 05:05:39,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-25 05:05:39,036] [main] java.version = 1.8.0_342
[testng] 05:05:39,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:05:39,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:05:39,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-25_05-05-39.log]
[testng] 05:05:39,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-25 05:05:39,086] [main] testng.directory = /data
[testng] [2024-11-25 05:05:39,087] [main] testng.configDirectory = /config
[testng] [2024-11-25 05:05:39,098] [main] testng.multiplier = 1.0
[testng] [2024-11-25 05:05:39,099] [main] testng.in-memory = false
[testng] [2024-11-25 05:05:39,099] [main] testng.allow-missing = false
[testng] [2024-11-25 05:05:39,099] [main] user.language = fr
[testng] [2024-11-25 05:05:39,099] [main] user.country = FR
[testng] [2024-11-25 05:05:39,099] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-25 05:08:53,379] [main] ----------------------------------------
[testng] [2024-11-25 05:08:53,379] [main] Total files: 15735
[testng] [2024-11-25 05:08:53,379] [main] Scan time: 194.28 s (12 ms/file)
[testng] [2024-11-25 05:08:53,379] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 125 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-25 05:12:30,410] [pool-1-thread-1] Initializing /data/converted/converted/mri-stack.tif:
[testng] 05:12:30,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:12:30,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:30,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-25_05-12-30.log]
[testng] 05:12:30,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11ead7a9 - End of configuration.
[testng] [2024-11-25 05:12:32,276] [pool-1-thread-12] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif:
[testng] 05:12:32,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:12:32,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:32,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-25_05-12-32.log]
[testng] 05:12:32,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b0f0d6e - End of configuration.
[testng] [2024-11-25 05:12:33,553] [pool-1-thread-11] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif:
[testng] 05:12:33,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:12:33,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:33,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-25_05-12-33.log]
[testng] 05:12:33,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@497c157 - End of configuration.
[testng] [2024-11-25 05:12:34,649] [pool-1-thread-10] Initializing /data/converted/kelsey/432x342BW.tif:
[testng] 05:12:34,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:12:34,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:34,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-25_05-12-34.log]
[testng] 05:12:34,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dc99bc1 - End of configuration.
[testng] [2024-11-25 05:12:35,836] [pool-1-thread-9] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif:
[testng] 05:12:35,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:12:35,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:35,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-25_05-12-35.log]
[testng] 05:12:35,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56ccd5f2 - End of configuration.
[testng] [2024-11-25 05:12:36,937] [pool-1-thread-8] Initializing /data/converted/converted/2chz.tif:
[testng] 05:12:36,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:12:36,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:36,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-25_05-12-36.log]
[testng] 05:12:36,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72e3d53 - End of configuration.
[testng] [2024-11-25 05:12:37,958] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif:
[testng] 05:12:37,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:12:37,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:37,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-25_05-12-37.log]
[testng] 05:12:37,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b0e796b - End of configuration.
[testng] [2024-11-25 05:12:39,335] [pool-1-thread-6] Initializing /data/converted/dietmar/138.tif:
[testng] 05:12:39,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:12:39,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:39,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-25_05-12-39.log]
[testng] 05:12:39,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36c6a4b7 - End of configuration.
[testng] [2024-11-25 05:12:41,353] [pool-1-thread-5] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif:
[testng] 05:12:41,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:12:41,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:41,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-25_05-12-41.log]
[testng] 05:12:41,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72186cac - End of configuration.
[testng] [2024-11-25 05:12:44,187] [pool-1-thread-4] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif:
[testng] 05:12:44,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:12:44,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:44,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-25_05-12-44.log]
[testng] 05:12:44,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b8dd076 - End of configuration.
[testng] [2024-11-25 05:12:45,632] [pool-1-thread-3] Initializing /data/converted/kelsey/650x514BW.tif:
[testng] 05:12:45,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:12:45,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:45,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-25_05-12-45.log]
[testng] 05:12:45,633 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6c6966 - End of configuration.
[testng] [2024-11-25 05:12:46,588] [pool-1-thread-2] Initializing /data/converted/converted/damian.tif:
[testng] 05:12:46,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:12:46,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:46,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-25_05-12-46.log]
[testng] 05:12:46,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57e261 - End of configuration.
[testng] [2024-11-25 05:13:14,456] [pool-1-thread-1] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif:
[testng] [2024-11-25 05:13:16,085] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif:
[testng] [2024-11-25 05:13:17,994] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif:
[testng] [2024-11-25 05:13:20,516] [pool-1-thread-3] Initializing /data/scott/Slide133-04.tif:
[testng] [2024-11-25 05:13:54,601] [pool-1-thread-1] Initializing /data/converted/karsten/Bild1.tif:
[testng] [2024-11-25 05:14:02,706] [pool-1-thread-3] Initializing /data/converted/darren/section0002_w1.tif:
[testng] [2024-11-25 05:14:39,363] [pool-1-thread-12] Initializing /data/converted/monica/Monica_elegans_movie.tif:
[testng] [2024-11-25 05:14:58,442] [pool-1-thread-3] Initializing /data/converted/markus/Long_TL_CElegans.tif:
[testng] [2024-11-25 05:15:10,946] [pool-1-thread-1] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif:
[testng] [2024-11-25 05:18:19,286] [pool-1-thread-8] Initializing /data/converted/dan/zstack_convalaria.tif:
[testng] [2024-11-25 05:19:16,951] [pool-1-thread-11] Initializing /data/scott/Slide133-11.tif:
[testng] [2024-11-25 05:19:27,387] [pool-1-thread-8] Initializing /data/converted/rolf/example_1-2010_11_25.tif:
[testng] [2024-11-25 05:19:31,063] [pool-1-thread-4] Initializing /data/converted/lior/live+cf2b.tif:
[testng] [2024-11-25 05:20:08,079] [pool-1-thread-11] Initializing /data/samples/mri-stack/mri-stack.tif:
[testng] [2024-11-25 05:20:25,278] [pool-1-thread-8] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif:
[testng] [2024-11-25 05:20:55,872] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif:
[testng] [2024-11-25 05:21:02,118] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009-0001a.tif:
[testng] [2024-11-25 05:21:27,958] [pool-1-thread-2] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif:
[testng] [2024-11-25 05:21:45,704] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif:
[testng] [2024-11-25 05:24:41,075] [pool-1-thread-9] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif:
[testng] [2024-11-25 05:25:35,286] [pool-1-thread-9] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif:
[testng] [2024-11-25 05:25:48,639] [pool-1-thread-7] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif:
[testng] [2024-11-25 05:26:33,102] [pool-1-thread-9] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif:
[testng] [2024-11-25 05:26:49,400] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif:
[testng] [2024-11-25 05:27:04,174] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009-0004.tif:
[testng] [2024-11-25 05:28:48,761] [pool-1-thread-10] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif:
[testng] [2024-11-25 05:31:39,109] [pool-1-thread-8] Initializing /data/othmar/mozaic.tif:
[testng] [2024-11-25 05:33:46,204] [pool-1-thread-9] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif:
[testng] [2024-11-25 05:35:48,384] [pool-1-thread-1] Initializing /data/converted/othmar/z-stack.tif:
[testng] [2024-11-25 05:36:24,813] [pool-1-thread-11] Initializing /data/converted/sebastien/F1.tif:
[testng] [2024-11-25 05:38:44,159] [pool-1-thread-8] Initializing /data/converted/thomas/test_axiocam_3_1.tif:
[testng] [2024-11-25 05:39:33,150] [pool-1-thread-4] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif:
[testng] [2024-11-25 05:39:52,871] [pool-1-thread-8] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif:
[testng] [2024-11-25 05:40:43,962] [pool-1-thread-8] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif:
[testng] [2024-11-25 05:41:55,493] [pool-1-thread-7] Initializing /data/converted/dan/adultnr1.tif:
[testng] [2024-11-25 05:43:25,426] [pool-1-thread-11] Initializing /data/scott/Slide133-01.tif:
[testng] [2024-11-25 05:44:04,680] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif:
[testng] [2024-11-25 05:44:25,145] [pool-1-thread-6] Initializing /data/converted/kelsey/1300x1030BW.tif:
[testng] [2024-11-25 05:44:28,665] [pool-1-thread-11] Initializing /data/converted/markus/HighSpeedParas.tif:
[testng] [2024-11-25 05:45:23,903] [pool-1-thread-6] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif:
[testng] [2024-11-25 05:53:31,771] [pool-1-thread-6] Initializing /data/converted/jeffrey/750-30-03.tif:
[testng] [2024-11-25 05:54:42,569] [pool-1-thread-6] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif:
[testng] [2024-11-25 05:59:05,568] [pool-1-thread-5] Initializing /data/converted/vladan/vladan.tif:
[testng] [2024-11-25 05:59:45,189] [pool-1-thread-7] Initializing /data/converted/karsten/Bild2.tif:
[testng] [2024-11-25 06:00:49,777] [pool-1-thread-10] Initializing /data/converted/miso/Aufnahme-184058-0002.tif:
[testng] [2024-11-25 06:01:04,666] [pool-1-thread-7] Initializing /data/converted/dietmar/137.tif:
[testng] [2024-11-25 06:01:35,033] [pool-1-thread-4] Initializing /data/converted/converted/2chzt.tif:
[testng] [2024-11-25 06:01:43,181] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif:
[testng] [2024-11-25 06:06:08,773] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif:
[testng] [2024-11-25 06:11:21,424] [pool-1-thread-5] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif:
[testng] [2024-11-25 06:13:31,493] [pool-1-thread-9] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif:
[testng] [2024-11-25 06:14:40,738] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif:
[testng] [2024-11-25 06:17:00,231] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif:
[testng] [2024-11-25 06:17:47,494] [pool-1-thread-10] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif:
[testng] [2024-11-25 06:19:24,554] [pool-1-thread-9] Initializing /data/converted/sebastien/test.tif:
[testng] [2024-11-25 06:21:49,623] [pool-1-thread-1] Initializing /data/converted/stephan/notok2.tif:
[testng] [2024-11-25 06:22:28,706] [pool-1-thread-3] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif:
[testng] [2024-11-25 06:23:39,936] [pool-1-thread-10] Initializing /data/converted/karsten/247096n3s3s9.tif:
[testng] 06:24:54,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:24:54,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:24:54,597 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-25_06-24-54.log]
[testng] 06:24:54,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70f920f7 - End of configuration.
[testng] [2024-11-25 06:25:33,201] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif:
[testng] [2024-11-25 06:27:45,457] [pool-1-thread-10] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif:
[testng] [2024-11-25 06:31:28,021] [pool-1-thread-7] Initializing /data/converted/michel/c.tif:
[testng] [2024-11-25 06:31:31,635] [pool-1-thread-2] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif:
[testng] [2024-11-25 06:32:41,730] [pool-1-thread-7] Initializing /data/converted/rolf/example_2-2010_11_25.tif:
[testng] [2024-11-25 06:33:04,867] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif:
[testng] [2024-11-25 06:33:15,098] [pool-1-thread-8] Initializing /data/converted/rachel/40K 30s A2.tif:
[testng] [2024-11-25 06:33:38,164] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif:
[testng] [2024-11-25 06:34:23,568] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif:
[testng] [2024-11-25 06:34:54,682] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif:
[testng] [2024-11-25 06:35:27,218] [pool-1-thread-9] Initializing /data/converted/michel/e.tif:
[testng] [2024-11-25 06:36:24,653] [pool-1-thread-3] Initializing /data/converted/nicolas/image.tif:
[testng] [2024-11-25 06:37:10,857] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif:
[testng] [2024-11-25 06:37:18,159] [pool-1-thread-9] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif:
[testng] [2024-11-25 06:38:26,472] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif:
[testng] [2024-11-25 06:39:38,268] [pool-1-thread-1] Initializing /data/converted/markus/30channels_exposure-series.tif:
[testng] [2024-11-25 06:44:05,595] [pool-1-thread-1] Initializing /data/converted/david/snap-181518-0001.tif:
[testng] [2024-11-25 06:44:54,371] [pool-1-thread-1] Initializing /data/converted/strand/2Colors1Plane.tif:
[testng] [2024-11-25 06:46:10,954] [pool-1-thread-10] Initializing /data/converted/darren/section0001_w1.tif:
[testng] [2024-11-25 06:46:19,872] [pool-1-thread-6] Initializing /data/converted/eirinn/demo-tile.tif:
[testng] [2024-11-25 06:46:27,834] [pool-1-thread-1] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif:
[testng] [2024-11-25 06:46:46,754] [pool-1-thread-5] Initializing /data/converted/michel/a.tif:
[testng] [2024-11-25 06:46:58,820] [pool-1-thread-10] Initializing /data/converted/rachel/40K 30s A1.tif:
[testng] [2024-11-25 06:47:23,972] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009_0022.tif:
[testng] [2024-11-25 06:47:29,857] [pool-1-thread-5] Initializing /data/converted/converted/damian-compressed.tif:
[testng] [2024-11-25 06:47:40,920] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif:
[testng] [2024-11-25 06:47:52,338] [pool-1-thread-10] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif:
[testng] [2024-11-25 06:48:05,051] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif:
[testng] [2024-11-25 06:48:14,596] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif:
[testng] [2024-11-25 06:48:36,271] [pool-1-thread-8] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif:
[testng] [2024-11-25 06:48:53,813] [pool-1-thread-10] Initializing /data/converted/susan/BY4741NQ2.tif:
[testng] [2024-11-25 06:49:47,425] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif:
[testng] [2024-11-25 06:49:50,202] [pool-1-thread-3] Initializing /data/converted/dietmar/dapi-texasred-0015.tif:
[testng] [2024-11-25 06:50:37,115] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif:
[testng] [2024-11-25 06:51:54,081] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif:
[testng] [2024-11-25 06:52:39,978] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif:
[testng] 06:59:21,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:59:21,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:21,232 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-25_06-59-21.log]
[testng] 06:59:21,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f581609 - End of configuration.
[testng] [2024-11-25 06:59:25,413] [pool-1-thread-3] Initializing /data/converted/michel/b.tif:
[testng] [2024-11-25 06:59:48,345] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif:
[testng] [2024-11-25 07:00:26,764] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif:
[testng] [2024-11-25 07:01:10,827] [pool-1-thread-5] Initializing /data/converted/michel/d.tif:
[testng] [2024-11-25 07:01:28,952] [pool-1-thread-1] Initializing /data/dorai/F_ZImage10_(X10)_C.tif:
[testng] [2024-11-25 07:01:41,516] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif:
[testng] [2024-11-25 07:02:05,261] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama.tif:
[testng] [2024-11-25 07:02:19,711] [pool-1-thread-1] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif:
[testng] [2024-11-25 07:02:37,568] [pool-1-thread-1] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif:
[testng] [2024-11-25 07:02:56,094] [pool-1-thread-4] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif:
[testng] [2024-11-25 07:03:00,815] [pool-1-thread-10] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif:
[testng] [2024-11-25 07:03:11,945] [pool-1-thread-5] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif:
[testng] [2024-11-25 07:03:19,238] [pool-1-thread-8] Initializing /data/converted/stephan/notok1.tif:
[testng] [2024-11-25 07:03:50,502] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif:
[testng] [2024-11-25 07:03:55,886] [pool-1-thread-6] Initializing /data/scott/Slide133-08.tif:
[testng] [2024-11-25 07:04:31,746] [pool-1-thread-2] Initializing /data/converted/othmar/mozaic.tif:
[testng] [2024-11-25 07:04:46,977] [pool-1-thread-6] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif:
[testng] [2024-11-25 07:05:03,297] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif:
[testng] [2024-11-25 07:05:38,434] [pool-1-thread-6] Initializing /data/converted/lior/live+cf5b.tif:
[testng] 08:01:09,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 08:01:09,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:01:09,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-25_08-01-09.log]
[testng] 08:01:09,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f6f4fde - End of configuration.
[testng] 08:04:35,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:04:35,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:04:35,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-25_08-04-35.log]
[testng] 08:04:35,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b93d874 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 6625, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 179 minutes 2 seconds
Finished: SUCCESS