Started by upstream project "BIOFORMATS-test-repo" build number 267
originally caused by:
Started by upstream project "Trigger" build number 290
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins13937323563112976721.sh
+ '[' nikon-jp2 = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42250_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 06:17:48,490 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 06:17:48,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 06:17:48,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:17:48,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:17:48,493 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 06:17:48,493 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 06:17:48,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 06:17:48,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:17:48,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:17:48,494 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 06:17:48,494 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 06:17:48,494 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 06:17:48,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 06:17:48,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 06:17:48,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 06:17:48,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 06:17:48,746 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 06:17:48,746 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 06:17:48,746 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 06:17:48,747 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 06:17:48,747 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 06:17:48,748 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 06:17:48,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-25 06:17:48,757] [main] java.version = 1.8.0_342
[testng] 06:17:48,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:17:48,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:17:48,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-25_06-17-48.log]
[testng] 06:17:48,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-25 06:17:48,807] [main] testng.directory = /data
[testng] [2024-11-25 06:17:48,807] [main] testng.configDirectory = /config
[testng] [2024-11-25 06:17:48,819] [main] testng.multiplier = 1.0
[testng] [2024-11-25 06:17:48,819] [main] testng.in-memory = false
[testng] [2024-11-25 06:17:48,819] [main] testng.allow-missing = false
[testng] [2024-11-25 06:17:48,819] [main] user.language = fr
[testng] [2024-11-25 06:17:48,819] [main] user.country = FR
[testng] [2024-11-25 06:17:48,819] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-25 06:17:52,190] [main] ----------------------------------------
[testng] [2024-11-25 06:17:52,190] [main] Total files: 11
[testng] [2024-11-25 06:17:52,190] [main] Scan time: 3.371 s (306 ms/file)
[testng] [2024-11-25 06:17:52,191] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-25 06:18:15,105] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed008G.tif:
[testng] 06:18:15,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:18:15,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:15,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-25_06-18-15.log]
[testng] 06:18:15,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e133dbb - End of configuration.
[testng] [2024-11-25 06:18:19,056] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008R.tif:
[testng] 06:18:19,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:18:19,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:19,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-25_06-18-19.log]
[testng] 06:18:19,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c87fb44 - End of configuration.
[testng] [2024-11-25 06:18:23,088] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed003.jpg:
[testng] 06:18:23,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:18:23,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:23,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-25_06-18-23.log]
[testng] 06:18:23,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49f60a94 - End of configuration.
[testng] [2024-11-25 06:18:23,568] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed008.jp2:
[testng] 06:18:23,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:18:23,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:23,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-25_06-18-23.log]
[testng] 06:18:23,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bdb82a8 - End of configuration.
[testng] [2024-11-25 06:18:25,913] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed008B.tif:
[testng] 06:18:25,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:18:25,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:25,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-25_06-18-25.log]
[testng] 06:18:25,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1032cd6d - End of configuration.
[testng] [2024-11-25 06:18:30,130] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed005.bmp:
[testng] 06:18:30,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:18:30,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:30,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-25_06-18-30.log]
[testng] 06:18:30,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1842ca30 - End of configuration.
[testng] [2024-11-25 06:18:30,538] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed006.png:
[testng] 06:18:30,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:18:30,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:30,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-25_06-18-30.log]
[testng] 06:18:30,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8d0c86 - End of configuration.
[testng] [2024-11-25 06:18:30,676] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed004.tif:
[testng] 06:18:30,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:18:30,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:30,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-25_06-18-30.log]
[testng] 06:18:30,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@439e7973 - End of configuration.
[testng] [2024-11-25 06:18:34,128] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed001.jp2:
[testng] 06:18:34,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:18:34,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:34,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-25_06-18-34.log]
[testng] 06:18:34,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71298cdd - End of configuration.
[testng] [2024-11-25 06:18:35,954] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed008BGR.tif:
[testng] 06:18:35,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:18:35,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:35,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-25_06-18-35.log]
[testng] 06:18:35,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56cb4727 - End of configuration.
[testng] [2024-11-25 06:18:39,176] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed007.gif:
[testng] 06:18:39,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:18:39,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:39,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-25_06-18-39.log]
[testng] 06:18:39,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79293c2 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 15 seconds
Finished: SUCCESS