Started by upstream project "BIOFORMATS-test-repo" build number 31
originally caused by:
Started by upstream project "Trigger" build number 35
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins12243822557091440557.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_4230_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 08:45:21,629 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 08:45:21,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 08:45:21,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:45:21,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:45:21,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 08:45:21,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 08:45:21,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 08:45:21,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:45:21,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:45:21,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 08:45:21,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 08:45:21,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 08:45:21,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 08:45:21,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 08:45:21,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 08:45:21,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 08:45:21,914 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 08:45:21,914 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 08:45:21,914 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 08:45:21,915 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 08:45:21,915 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 08:45:21,916 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 08:45:21,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-12 08:45:21,926] [main] java.version = 1.8.0_342
[testng] 08:45:21,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:45:21,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:21,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_08-45-21.log]
[testng] 08:45:21,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-12 08:45:21,982] [main] testng.directory = /data
[testng] [2024-04-12 08:45:21,982] [main] testng.configDirectory = /config
[testng] [2024-04-12 08:45:21,995] [main] testng.multiplier = 1.0
[testng] [2024-04-12 08:45:21,995] [main] testng.in-memory = false
[testng] [2024-04-12 08:45:21,995] [main] testng.allow-missing = false
[testng] [2024-04-12 08:45:21,995] [main] user.language = en
[testng] [2024-04-12 08:45:21,995] [main] user.country = ${user.country}
[testng] [2024-04-12 08:45:21,996] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-12 08:45:23,250] [main] ----------------------------------------
[testng] [2024-04-12 08:45:23,250] [main] Total files: 22
[testng] [2024-04-12 08:45:23,250] [main] Scan time: 1.254 s (57 ms/file)
[testng] [2024-04-12 08:45:23,250] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-12 08:45:31,180] [pool-1-thread-1] Initializing /data/converted/mitosis-test.ipw:
[testng] 08:45:31,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 08:45:31,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:31,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_08-45-31.log]
[testng] 08:45:31,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@559b080 - End of configuration.
[testng] [2024-04-12 08:45:31,220] [pool-1-thread-12] Initializing /data/xiuwen/head2.seq:
[testng] 08:45:31,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 08:45:31,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:31,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-12_08-45-31.log]
[testng] 08:45:31,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3635e727 - End of configuration.
[testng] [2024-04-12 08:45:31,333] [pool-1-thread-11] Initializing /data/converted/clown.ipw:
[testng] 08:45:31,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 08:45:31,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:31,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_08-45-31.log]
[testng] 08:45:31,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@89a5e85 - End of configuration.
[testng] [2024-04-12 08:45:31,352] [pool-1-thread-10] Initializing /data/converted/dub01.ipw:
[testng] 08:45:31,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 08:45:31,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:31,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_08-45-31.log]
[testng] 08:45:31,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67e78a81 - End of configuration.
[testng] [2024-04-12 08:45:31,379] [pool-1-thread-9] Initializing /data/converted/clown.seq:
[testng] 08:45:31,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 08:45:31,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:31,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_08-45-31.log]
[testng] 08:45:31,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@712eb4c3 - End of configuration.
[testng] [2024-04-12 08:45:31,401] [pool-1-thread-8] Initializing /data/converted/clown8c.seq:
[testng] 08:45:31,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 08:45:31,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:31,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_08-45-31.log]
[testng] 08:45:31,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f4f3dad - End of configuration.
[testng] [2024-04-12 08:45:31,413] [pool-1-thread-7] Initializing /data/alex/AFAset0003.ips:
[testng] 08:45:31,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 08:45:31,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:31,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_08-45-31.log]
[testng] 08:45:31,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@368677ed - End of configuration.
[testng] [2024-04-12 08:45:31,426] [pool-1-thread-6] Initializing /data/converted/mitosis-test.tif:
[testng] 08:45:31,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 08:45:31,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:31,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_08-45-31.log]
[testng] 08:45:31,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aedb57f - End of configuration.
[testng] [2024-04-12 08:45:31,548] [pool-1-thread-5] Initializing /data/converted/clown.tif:
[testng] 08:45:31,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 08:45:31,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:31,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_08-45-31.log]
[testng] 08:45:31,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f86c212 - End of configuration.
[testng] [2024-04-12 08:45:31,565] [pool-1-thread-4] Initializing /data/converted/dub01.seq:
[testng] 08:45:31,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 08:45:31,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:31,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_08-45-31.log]
[testng] 08:45:31,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c054032 - End of configuration.
[testng] [2024-04-12 08:45:31,586] [pool-1-thread-3] Initializing /data/samples/HEART.SEQ:
[testng] 08:45:31,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 08:45:31,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:31,587 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_08-45-31.log]
[testng] 08:45:31,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3495c447 - End of configuration.
[testng] [2024-04-12 08:45:31,641] [pool-1-thread-2] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] 08:45:31,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 08:45:31,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:45:31,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_08-45-31.log]
[testng] 08:45:31,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c6a5a66 - End of configuration.
[testng] [2024-04-12 08:45:33,370] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] [2024-04-12 08:45:33,396] [pool-1-thread-9] Initializing /data/converted/dub01.pic:
[testng] [2024-04-12 08:45:33,419] [pool-1-thread-11] Initializing /data/converted/clown8c.tif:
[testng] [2024-04-12 08:45:33,442] [pool-1-thread-8] Initializing /data/samples/PROBE.TIF:
[testng] [2024-04-12 08:45:33,460] [pool-1-thread-1] Initializing /data/converted/mitosis-test.seq:
[testng] [2024-04-12 08:45:33,489] [pool-1-thread-3] Initializing /data/samples/FLDUAL.TIF:
[testng] [2024-04-12 08:45:33,540] [pool-1-thread-4] Initializing /data/converted/clown8c.ipw:
[testng] [2024-04-12 08:45:33,550] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] [2024-04-12 08:45:33,651] [pool-1-thread-2] Initializing /data/samples/TISSUE.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 30 seconds
Finished: SUCCESS