Started by upstream project "BIOFORMATS-test-repo" build number 32
originally caused by:
 Started by upstream project "Trigger" build number 36
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins13242519095839413742.sh
+ '[' leica = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_4235_merge_ci -v /uod/idr/repos/curated/leica:/data -v /uod/idr-scratch/merge-ci/curated/leica:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:20:13,238 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:20:13,240 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 01:20:13,240 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:20:13,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:20:13,241 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:20:13,242 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:20:13,242 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:20:13,242 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:20:13,242 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:20:13,243 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:20:13,243 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:20:13,244 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:20:13,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:20:13,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:20:13,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:20:13,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:20:13,461 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:20:13,461 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:20:13,461 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:20:13,462 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:20:13,462 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 01:20:13,463 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 01:20:13,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 221 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-13 01:20:13,471] [main] java.version = 11.0.16
   [testng] 01:20:13,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:20:13,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:13,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-13_01-20-13.log]
   [testng] 01:20:13,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-04-13 01:20:13,522] [main] testng.directory = /data
   [testng] [2024-04-13 01:20:13,523] [main] testng.configDirectory = /config
   [testng] [2024-04-13 01:20:13,532] [main] testng.multiplier = 1.0
   [testng] [2024-04-13 01:20:13,533] [main] testng.in-memory = false
   [testng] [2024-04-13 01:20:13,533] [main] testng.allow-missing = false
   [testng] [2024-04-13 01:20:13,533] [main] user.language = en
   [testng] [2024-04-13 01:20:13,533] [main] user.country = ${user.country}
   [testng] [2024-04-13 01:20:13,533] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-13 01:20:25,271] [main] ----------------------------------------
   [testng] [2024-04-13 01:20:25,271] [main] Total files: 5651
   [testng] [2024-04-13 01:20:25,271] [main] Scan time: 11.738 s (2 ms/file)
   [testng] [2024-04-13 01:20:25,272] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 44 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-13 01:20:44,224] [pool-1-thread-1] Initializing /data/constantin/cell6/cell6/Quant_Image_01.jpg: 
   [testng] 01:20:44,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:20:44,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:44,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-13_01-20-44.log]
   [testng] 01:20:44,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a31a35d - End of configuration.
   [testng] [2024-04-13 01:20:44,245] [pool-1-thread-12] Initializing /data/constantin/cell6/cell6/Quant_Image_00.jpg: 
   [testng] 01:20:44,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:20:44,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:44,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-13_01-20-44.log]
   [testng] 01:20:44,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4149f100 - End of configuration.
   [testng] [2024-04-13 01:20:44,254] [pool-1-thread-11] Initializing /data/clay/leica_stack.lei: 
   [testng] 01:20:44,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:20:44,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:44,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-13_01-20-44.log]
   [testng] 01:20:44,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@327925db - End of configuration.
   [testng] [2024-04-13 01:20:44,296] [pool-1-thread-10] Initializing /data/simon/Leica demo/RNA FISH/RNA FISH.lei: 
   [testng] 01:20:44,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:20:44,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:44,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-13_01-20-44.log]
   [testng] 01:20:44,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52dab13e - End of configuration.
   [testng] [2024-04-13 01:20:44,416] [pool-1-thread-9] Initializing /data/constantin/cell6/Quant_Image_00.jpg: 
   [testng] 01:20:44,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:20:44,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:44,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-13_01-20-44.log]
   [testng] 01:20:44,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fbb9676 - End of configuration.
   [testng] [2024-04-13 01:20:44,430] [pool-1-thread-8] Initializing /data/simon/Leica demo/CFP-DsRed YFP neg/CFP-DsRed YFP neg.lei: 
   [testng] 01:20:44,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:20:44,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:44,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-13_01-20-44.log]
   [testng] 01:20:44,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7232dd98 - End of configuration.
   [testng] [2024-04-13 01:20:44,504] [pool-1-thread-7] Initializing /data/martin/100422_02-rg-100x_CF1/100422_02-rg-100x_CF1.lei: 
   [testng] 01:20:44,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:20:44,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:44,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-13_01-20-44.log]
   [testng] 01:20:44,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ef73b33 - End of configuration.
   [testng] [2024-04-13 01:20:44,791] [pool-1-thread-6] Initializing /data/brian/050627-leica/050628-leica.lei: 
   [testng] 01:20:44,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:20:44,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:44,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-13_01-20-44.log]
   [testng] 01:20:44,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bea609 - End of configuration.
   [testng] [2024-04-13 01:20:45,371] [pool-1-thread-5] Initializing /data/berra/eggcmgfp230909/eggcmgfp230909.lei: 
   [testng] 01:20:45,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:20:45,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:45,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-13_01-20-45.log]
   [testng] 01:20:45,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f089346 - End of configuration.
   [testng] [2024-04-13 01:20:45,474] [pool-1-thread-4] Initializing /data/joel/sequential scan 3/sequential scan 3.lei: 
   [testng] 01:20:45,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:20:45,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:45,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-13_01-20-45.log]
   [testng] 01:20:45,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@787dc2cc - End of configuration.
   [testng] [2024-04-13 01:20:45,537] [pool-1-thread-3] Initializing /data/constantin/cell6/cell6.lei: 
   [testng] 01:20:45,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:20:45,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:45,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-13_01-20-45.log]
   [testng] 01:20:45,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52c01294 - End of configuration.
   [testng] [2024-04-13 01:20:45,615] [pool-1-thread-2] Initializing /data/samples/Leica_sample.lei: 
   [testng] 01:20:45,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:20:45,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:45,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-13_01-20-45.log]
   [testng] 01:20:45,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71c342b4 - End of configuration.
   [testng] [2024-04-13 01:20:46,974] [pool-1-thread-9] Initializing /data/stjude/NIHSSE02-3.lei: 
   [testng] [2024-04-13 01:20:47,026] [pool-1-thread-12] Initializing /data/david/intestine/intestine.lei: 
   [testng] [2024-04-13 01:20:47,061] [pool-1-thread-1] Initializing /data/andrey/10310500/10310500.lei: 
   [testng] [2024-04-13 01:20:47,139] [pool-1-thread-2] Initializing /data/grant/Leica SP2 (25-11-10).lei: 
   [testng] [2024-04-13 01:20:47,243] [pool-1-thread-11] Initializing /data/constantin/cell6/Quant_Image_02.jpg: 
   [testng] [2024-04-13 01:20:47,485] [pool-1-thread-11] Initializing /data/michael/2007-01-31_zres_sp2.lei: 
   [testng] [2024-04-13 01:20:49,050] [pool-1-thread-11] Initializing /data/joel/sequential scan 2/sequential scan 2.lei: 
   [testng] [2024-04-13 01:20:52,762] [pool-1-thread-9] Initializing /data/christophe/LEI_Saturated_Bug/070123_HippoQ2Q3/Exemple.tif: 
   [testng] [2024-04-13 01:20:53,984] [pool-1-thread-9] Initializing /data/julie/biorad/8291mcd8_raw01.pic: 
   [testng] [2024-04-13 01:20:54,864] [pool-1-thread-9] Initializing /data/clay/leica_stack-exported/leica_stack-exported.lei: 
   [testng] [2024-04-13 01:20:55,604] [pool-1-thread-9] Initializing /data/martin/samples-SP2/samples-SP2.lei: 
   [testng] [2024-04-13 01:20:58,558] [pool-1-thread-10] Initializing /data/christophe/Leica stacks/Nf5.lei: 
   [testng] [2024-04-13 01:21:02,805] [pool-1-thread-8] Initializing /data/constantin/cell6/Logo.jpg: 
   [testng] [2024-04-13 01:21:03,067] [pool-1-thread-8] Initializing /data/simon/Leica demo/GFP-YFPcaax/GFP-YFPcaax.lei: 
   [testng] [2024-04-13 01:21:05,242] [pool-1-thread-3] Initializing /data/david/megan/megan.lei: 
   [testng] [2024-04-13 01:21:07,052] [pool-1-thread-4] Initializing /data/constantin/cell6/cell6/Logo.jpg: 
   [testng] [2024-04-13 01:21:07,377] [pool-1-thread-4] Initializing /data/clay/leica_stack.tif: 
   [testng] [2024-04-13 01:21:08,032] [pool-1-thread-4] Initializing /data/constantin/cell6/cell6/Quant_Image_02.jpg: 
   [testng] [2024-04-13 01:21:08,238] [pool-1-thread-4] Initializing /data/christophe/LEI_Saturated_Bug/070123_HippoQ2Q3/070123_HippoQ2Q3.lei: 
   [testng] [2024-04-13 01:21:10,890] [pool-1-thread-11] Initializing /data/julie/c164_1.tif: 
   [testng] [2024-04-13 01:21:13,540] [pool-1-thread-10] Initializing /data/simon/Leica demo/test/test.lei: 
   [testng] [2024-04-13 01:21:14,600] [pool-1-thread-9] Initializing /data/julie/biorad/25-65.tif: 
   [testng] [2024-04-13 01:21:15,733] [pool-1-thread-9] Initializing /data/vytas/4voxels/4voxels.lei: 
   [testng] [2024-04-13 01:21:17,971] [pool-1-thread-11] Initializing /data/constantin/cell6/Quant_Image_01.jpg: 
   [testng] [2024-04-13 01:21:18,168] [pool-1-thread-11] Initializing /data/brian/tropo/tropo.lei: 
   [testng] [2024-04-13 01:21:19,807] [pool-1-thread-11] Initializing /data/matija/PapilioScale40x/PapilioScale40x.lei: 
   [testng] [2024-04-13 01:21:21,202] [pool-1-thread-2] Initializing /data/constantin/cell6/Graphs_1_00.jpg: 
   [testng] [2024-04-13 01:21:21,579] [pool-1-thread-2] Initializing /data/oliver/o459/o459.lei: 
   [testng] [2024-04-13 01:21:21,792] [pool-1-thread-4] Initializing /data/simon/Leica demo/fish/fish.lei: 
   [testng] [2024-04-13 01:21:25,627] [pool-1-thread-12] Initializing /data/mark/071026-561nm check/071026-561nm check.lei: 
   [testng] [2024-04-13 01:21:26,895] [pool-1-thread-8] Initializing /data/brian/leica-original/050118.lei: 
   [testng] [2024-04-13 01:21:29,021] [pool-1-thread-5] Initializing /data/christophe/LEI_Saturated_Bug/Saturated_Problem.tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 2332, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 3 minutes 33 seconds
Finished: SUCCESS