Started by upstream project "BIOFORMATS-test-repo" build number 268
originally caused by:
 Started by upstream project "Trigger" build number 291
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins941903955147237948.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42354_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 07:12:46,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 07:12:46,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 07:12:46,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 07:12:46,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 07:12:46,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 07:12:46,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 07:12:46,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 07:12:46,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 07:12:46,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 07:12:46,968 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 07:12:46,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 07:12:46,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 07:12:47,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 07:12:47,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 07:12:47,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 07:12:47,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 07:12:47,180 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 07:12:47,180 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 07:12:47,180 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 07:12:47,180 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 07:12:47,181 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 07:12:47,181 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 07:12:47,181 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 213 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-26 07:12:47,190] [main] java.version = 11.0.16
   [testng] 07:12:47,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 07:12:47,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:12:47,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-26_07-12-47.log]
   [testng] 07:12:47,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-11-26 07:12:47,237] [main] testng.directory = /data
   [testng] [2024-11-26 07:12:47,237] [main] testng.configDirectory = /config
   [testng] [2024-11-26 07:12:47,246] [main] testng.multiplier = 1.0
   [testng] [2024-11-26 07:12:47,247] [main] testng.in-memory = false
   [testng] [2024-11-26 07:12:47,247] [main] testng.allow-missing = false
   [testng] [2024-11-26 07:12:47,247] [main] user.language = en
   [testng] [2024-11-26 07:12:47,247] [main] user.country = ${user.country}
   [testng] [2024-11-26 07:12:47,247] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-26 07:13:12,498] [main] ----------------------------------------
   [testng] [2024-11-26 07:13:12,498] [main] Total files: 40
   [testng] [2024-11-26 07:13:12,498] [main] Scan time: 25.25 s (631 ms/file)
   [testng] [2024-11-26 07:13:12,498] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 38 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-26 07:16:33,313] [pool-1-thread-1] Initializing /data/curtis/mri-stack-bf.avi: 
   [testng] 07:16:33,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 07:16:33,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:16:33,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-26_07-16-33.log]
   [testng] 07:16:33,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eed3b2a - End of configuration.
   [testng] [2024-11-26 07:16:35,291] [pool-1-thread-12] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: 
   [testng] 07:16:35,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 07:16:35,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:16:35,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-26_07-16-35.log]
   [testng] 07:16:35,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b8ed3e0 - End of configuration.
   [testng] [2024-11-26 07:16:38,096] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi: 
   [testng] 07:16:38,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 07:16:38,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:16:38,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-26_07-16-38.log]
   [testng] 07:16:38,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c5073d - End of configuration.
   [testng] [2024-11-26 07:16:42,541] [pool-1-thread-10] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: 
   [testng] 07:16:42,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 07:16:42,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:16:42,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-26_07-16-42.log]
   [testng] 07:16:42,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fd59c5c - End of configuration.
   [testng] [2024-11-26 07:16:45,190] [pool-1-thread-9] Initializing /data/simon/24_bit_problem.avi: 
   [testng] 07:16:45,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 07:16:45,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:16:45,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-26_07-16-45.log]
   [testng] 07:16:45,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cebca2f - End of configuration.
   [testng] [2024-11-26 07:16:47,382] [pool-1-thread-8] Initializing /data/qa-11011/M-flow10001.avi: 
   [testng] 07:16:47,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 07:16:47,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:16:47,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-26_07-16-47.log]
   [testng] 07:16:47,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b1f1f2b - End of configuration.
   [testng] [2024-11-26 07:16:49,316] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi: 
   [testng] 07:16:49,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 07:16:49,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:16:49,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-26_07-16-49.log]
   [testng] 07:16:49,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@446b09a6 - End of configuration.
   [testng] [2024-11-26 07:16:51,167] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie 3.avi: 
   [testng] 07:16:51,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 07:16:51,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:16:51,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-26_07-16-51.log]
   [testng] 07:16:51,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23dc051 - End of configuration.
   [testng] [2024-11-26 07:16:53,276] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: 
   [testng] 07:16:53,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 07:16:53,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:16:53,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-26_07-16-53.log]
   [testng] 07:16:53,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@568f5d60 - End of configuration.
   [testng] [2024-11-26 07:16:55,441] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie.avi: 
   [testng] 07:16:55,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 07:16:55,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:16:55,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-26_07-16-55.log]
   [testng] 07:16:55,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@157ebc08 - End of configuration.
   [testng] [2024-11-26 07:16:57,386] [pool-1-thread-3] Initializing /data/curtis/mri-stack-ij-new.avi: 
   [testng] 07:16:57,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 07:16:57,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:16:57,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-26_07-16-57.log]
   [testng] 07:16:57,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c3aeec - End of configuration.
   [testng] [2024-11-26 07:16:59,665] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI: 
   [testng] 07:16:59,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 07:16:59,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:16:59,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-26_07-16-59.log]
   [testng] 07:16:59,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ccaa0df - End of configuration.
   [testng] [2024-11-26 07:17:25,371] [pool-1-thread-12] Initializing /data/prairie/cornea dc and macs.AVI: 
   [testng] [2024-11-26 07:17:27,687] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-old.avi: 
   [testng] [2024-11-26 07:17:30,342] [pool-1-thread-10] Initializing /data/william/worm.avi: 
   [testng] [2024-11-26 07:17:32,544] [pool-1-thread-3] Initializing /data/roger/spheroid1.lsm movie.avi: 
   [testng] [2024-11-26 07:17:35,364] [pool-1-thread-1] Initializing /data/jae/20xD_5minfor14h.avi: 
   [testng] [2024-11-26 07:17:37,977] [pool-1-thread-5] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: 
   [testng] [2024-11-26 07:17:40,210] [pool-1-thread-8] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: 
   [testng] [2024-11-26 07:17:42,711] [pool-1-thread-7] Initializing /data/kurt/63x_6um.avi: 
   [testng] [2024-11-26 07:17:45,440] [pool-1-thread-2] Initializing /data/chris/APZ04_009.avi: 
   [testng] [2024-11-26 07:17:48,605] [pool-1-thread-9] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: 
   [testng] [2024-11-26 07:17:50,822] [pool-1-thread-6] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: 
   [testng] [2024-11-26 07:17:52,722] [pool-1-thread-4] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: 
   [testng] [2024-11-26 07:18:17,193] [pool-1-thread-4] Initializing /data/chip_avi/Level004-WA-116.avi: 
   [testng] [2024-11-26 07:18:19,534] [pool-1-thread-10] Initializing /data/kurt/40x_6um_2.avi: 
   [testng] [2024-11-26 07:18:21,981] [pool-1-thread-11] Initializing /data/qa-5019/nemo-2_10_20.avi: 
   [testng] [2024-11-26 07:18:24,992] [pool-1-thread-5] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: 
   [testng] [2024-11-26 07:18:28,300] [pool-1-thread-7] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: 
   [testng] [2024-11-26 07:18:30,997] [pool-1-thread-12] Initializing /data/chip_avi/Level003-DB-089.avi: 
   [testng] [2024-11-26 07:18:33,410] [pool-1-thread-3] Initializing /data/roger/op9middle40x.lsm movie 2.avi: 
   [testng] [2024-11-26 07:18:36,347] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: 
   [testng] [2024-11-26 07:18:39,105] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie.avi: 
   [testng] [2024-11-26 07:18:41,691] [pool-1-thread-9] Initializing /data/qa-5019/nemo-2_1_.avi: 
   [testng] [2024-11-26 07:18:43,927] [pool-1-thread-6] Initializing /data/ascb/TIRF.avi: 
   [testng] [2024-11-26 07:18:46,802] [pool-1-thread-2] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: 
   [testng] [2024-11-26 07:19:14,153] [pool-1-thread-7] Initializing /data/kurt/40x_6um.avi: 
   [testng] [2024-11-26 07:19:15,830] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 4.avi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 2014, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 6 minutes 50 seconds
Finished: SUCCESS