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Started by upstream project "BIOFORMATS-test-repo" build number 269 originally caused by: Started by upstream project "Trigger" build number 292 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins18128342859183354408.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42433_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:21:34,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:34,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:21:34,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:34,352 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:34,353 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:34,353 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:34,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:34,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:34,354 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:34,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:34,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:34,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:34,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:34,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:34,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:34,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:34,536 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:34,536 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:34,536 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:34,536 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:34,536 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:21:34,537 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:21:34,537 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-27 00:21:34,545] [main] java.version = 17.0.2 [testng] 00:21:34,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:34,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:34,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_00-21-34.log] [testng] 00:21:34,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-27 00:21:34,589] [main] testng.directory = /data [testng] [2024-11-27 00:21:34,590] [main] testng.configDirectory = /config [testng] [2024-11-27 00:21:34,598] [main] testng.multiplier = 1.0 [testng] [2024-11-27 00:21:34,598] [main] testng.in-memory = false [testng] [2024-11-27 00:21:34,599] [main] testng.allow-missing = false [testng] [2024-11-27 00:21:34,599] [main] user.language = en [testng] [2024-11-27 00:21:34,599] [main] user.country = ${user.country} [testng] [2024-11-27 00:21:34,599] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-27 00:21:35,330] [main] ---------------------------------------- [testng] [2024-11-27 00:21:35,330] [main] Total files: 36 [testng] [2024-11-27 00:21:35,330] [main] Scan time: 0.731 s (20 ms/file) [testng] [2024-11-27 00:21:35,330] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-27 00:21:36,805] [pool-1-thread-1] Initializing /data/generated/mri-stack15.pcx: [testng] 00:21:36,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:21:36,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_00-21-36.log] [testng] 00:21:36,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f7a9f8d - End of configuration. [testng] [2024-11-27 00:21:36,871] [pool-1-thread-12] Initializing /data/generated/mri-stack6.pcx: [testng] 00:21:36,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:21:36,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_00-21-36.log] [testng] 00:21:36,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e5863e8 - End of configuration. [testng] [2024-11-27 00:21:36,887] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 00:21:36,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:21:36,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_00-21-36.log] [testng] 00:21:36,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fa57fb1 - End of configuration. [testng] [2024-11-27 00:21:36,907] [pool-1-thread-10] Initializing /data/generated/mri-stack14.pcx: [testng] 00:21:36,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:21:36,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_00-21-36.log] [testng] 00:21:36,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b48a44e - End of configuration. [testng] [2024-11-27 00:21:36,922] [pool-1-thread-9] Initializing /data/generated/mri-stack10.pcx: [testng] 00:21:36,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:21:36,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_00-21-36.log] [testng] 00:21:36,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@790a6afa - End of configuration. [testng] [2024-11-27 00:21:36,938] [pool-1-thread-8] Initializing /data/generated/mri-stack24.pcx: [testng] 00:21:36,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:21:36,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_00-21-36.log] [testng] 00:21:36,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f3e678f - End of configuration. [testng] [2024-11-27 00:21:36,950] [pool-1-thread-7] Initializing /data/generated/mri-stack2.pcx: [testng] 00:21:36,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:21:36,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_00-21-36.log] [testng] 00:21:36,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5389b543 - End of configuration. [testng] [2024-11-27 00:21:36,961] [pool-1-thread-6] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] 00:21:36,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:21:36,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_00-21-36.log] [testng] 00:21:36,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fedd022 - End of configuration. [testng] [2024-11-27 00:21:36,976] [pool-1-thread-5] Initializing /data/generated/mri-stack23.pcx: [testng] 00:21:36,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:21:36,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_00-21-36.log] [testng] 00:21:36,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21368e1c - End of configuration. [testng] [2024-11-27 00:21:36,988] [pool-1-thread-4] Initializing /data/generated/mri-stack25.pcx: [testng] 00:21:36,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:21:36,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_00-21-36.log] [testng] 00:21:36,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ed65e2 - End of configuration. [testng] [2024-11-27 00:21:37,000] [pool-1-thread-3] Initializing /data/generated/mri-stack3.pcx: [testng] 00:21:37,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:21:37,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:37,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_00-21-37.log] [testng] 00:21:37,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6323a76a - End of configuration. [testng] [2024-11-27 00:21:37,012] [pool-1-thread-2] Initializing /data/generated/mri-stack13.pcx: [testng] 00:21:37,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:21:37,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:37,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_00-21-37.log] [testng] 00:21:37,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7938f0d2 - End of configuration. [testng] [2024-11-27 00:21:40,289] [pool-1-thread-7] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-11-27 00:21:40,304] [pool-1-thread-4] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-11-27 00:21:40,317] [pool-1-thread-12] Initializing /data/generated/mri-stack4.pcx: [testng] [2024-11-27 00:21:40,327] [pool-1-thread-2] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-11-27 00:21:40,343] [pool-1-thread-5] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-11-27 00:21:40,353] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-11-27 00:21:40,363] [pool-1-thread-8] Initializing /data/generated/mri-stack17.pcx: [testng] [2024-11-27 00:21:40,373] [pool-1-thread-1] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-11-27 00:21:40,382] [pool-1-thread-9] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-11-27 00:21:40,392] [pool-1-thread-10] Initializing /data/generated/mri-stack7.pcx: [testng] [2024-11-27 00:21:40,406] [pool-1-thread-6] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-11-27 00:21:40,421] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-11-27 00:21:41,408] [pool-1-thread-3] Initializing /data/generated/mri-stack8.pcx: [testng] [2024-11-27 00:21:41,455] [pool-1-thread-8] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-11-27 00:21:41,491] [pool-1-thread-12] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-11-27 00:21:41,521] [pool-1-thread-5] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-11-27 00:21:41,536] [pool-1-thread-9] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-11-27 00:21:41,552] [pool-1-thread-10] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-11-27 00:21:41,575] [pool-1-thread-1] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-11-27 00:21:41,600] [pool-1-thread-11] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-11-27 00:21:41,609] [pool-1-thread-6] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-11-27 00:21:41,970] [pool-1-thread-3] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-11-27 00:21:42,175] [pool-1-thread-4] Initializing /data/generated/mri-stack5.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS