Started by upstream project "BIOFORMATS-test-repo" build number 269
originally caused by:
Started by upstream project "Trigger" build number 292
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins9936108871840489239.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42448_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:23:47,418 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:23:47,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:23:47,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:23:47,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:23:47,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:23:47,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:23:47,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:23:47,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:23:47,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:23:47,423 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:23:47,423 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:23:47,423 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:23:47,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:23:47,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:23:47,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:23:47,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:23:47,615 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:23:47,615 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:23:47,615 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:23:47,616 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:23:47,616 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:23:47,616 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:23:47,616 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-27 00:23:47,626] [main] java.version = 17.0.2
[testng] 00:23:47,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:23:47,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:47,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_00-23-47.log]
[testng] 00:23:47,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-11-27 00:23:47,675] [main] testng.directory = /data
[testng] [2024-11-27 00:23:47,675] [main] testng.configDirectory = /config
[testng] [2024-11-27 00:23:47,685] [main] testng.multiplier = 1.0
[testng] [2024-11-27 00:23:47,685] [main] testng.in-memory = false
[testng] [2024-11-27 00:23:47,685] [main] testng.allow-missing = false
[testng] [2024-11-27 00:23:47,686] [main] user.language = en
[testng] [2024-11-27 00:23:47,686] [main] user.country = ${user.country}
[testng] [2024-11-27 00:23:47,686] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-27 00:24:18,892] [main] ----------------------------------------
[testng] [2024-11-27 00:24:18,893] [main] Total files: 21
[testng] [2024-11-27 00:24:18,893] [main] Scan time: 31.206 s (1486 ms/file)
[testng] [2024-11-27 00:24:18,893] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-27 00:25:09,193] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt:
[testng] 00:25:09,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:25:09,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:09,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_00-25-09.log]
[testng] 00:25:09,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@99903c1 - End of configuration.
[testng] [2024-11-27 00:25:11,368] [pool-1-thread-12] Initializing /data/stefan/001_q18.txt:
[testng] 00:25:11,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:25:11,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:11,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_00-25-11.log]
[testng] 00:25:11,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@611d43dc - End of configuration.
[testng] [2024-11-27 00:25:13,000] [pool-1-thread-11] Initializing /data/stefan/001_q10.txt:
[testng] 00:25:13,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:25:13,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:13,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_00-25-13.log]
[testng] 00:25:13,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e0867d6 - End of configuration.
[testng] [2024-11-27 00:25:16,120] [pool-1-thread-10] Initializing /data/stefan/001_q01.txt:
[testng] 00:25:16,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:25:16,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:16,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_00-25-16.log]
[testng] 00:25:16,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17ca5ee7 - End of configuration.
[testng] [2024-11-27 00:25:17,791] [pool-1-thread-9] Initializing /data/stefan/001_q15.txt:
[testng] 00:25:17,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:25:17,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:17,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_00-25-17.log]
[testng] 00:25:17,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2732151b - End of configuration.
[testng] [2024-11-27 00:25:19,368] [pool-1-thread-8] Initializing /data/stefan/001_q13.txt:
[testng] 00:25:19,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:25:19,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:19,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_00-25-19.log]
[testng] 00:25:19,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21a59f07 - End of configuration.
[testng] [2024-11-27 00:25:20,876] [pool-1-thread-7] Initializing /data/stefan/001_q09.txt:
[testng] 00:25:20,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:25:20,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:20,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_00-25-20.log]
[testng] 00:25:20,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68707ea2 - End of configuration.
[testng] [2024-11-27 00:25:23,389] [pool-1-thread-6] Initializing /data/stefan/001_q06.txt:
[testng] 00:25:23,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:25:23,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:23,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_00-25-23.log]
[testng] 00:25:23,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72639505 - End of configuration.
[testng] [2024-11-27 00:25:24,620] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt:
[testng] 00:25:24,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:25:24,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:24,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_00-25-24.log]
[testng] 00:25:24,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b43323d - End of configuration.
[testng] [2024-11-27 00:25:28,445] [pool-1-thread-4] Initializing /data/stefan/001_q17.txt:
[testng] 00:25:28,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:25:28,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:28,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_00-25-28.log]
[testng] 00:25:28,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50a15581 - End of configuration.
[testng] [2024-11-27 00:25:30,640] [pool-1-thread-3] Initializing /data/stefan/001_q14.txt:
[testng] 00:25:30,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:25:30,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:30,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_00-25-30.log]
[testng] 00:25:30,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@277a4981 - End of configuration.
[testng] [2024-11-27 00:25:32,423] [pool-1-thread-2] Initializing /data/stefan/001_q11.txt:
[testng] 00:25:32,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:25:32,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:32,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_00-25-32.log]
[testng] 00:25:32,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40d18827 - End of configuration.
[testng] [2024-11-27 00:25:58,185] [pool-1-thread-1] Initializing /data/stefan/001_q05.txt:
[testng] [2024-11-27 00:26:00,457] [pool-1-thread-10] Initializing /data/stefan/001_q16.txt:
[testng] [2024-11-27 00:26:02,311] [pool-1-thread-12] Initializing /data/stefan/001_q03.txt:
[testng] [2024-11-27 00:26:05,186] [pool-1-thread-9] Initializing /data/stefan/001_q08.txt:
[testng] [2024-11-27 00:26:09,363] [pool-1-thread-4] Initializing /data/stefan/001_q07.txt:
[testng] [2024-11-27 00:26:13,931] [pool-1-thread-6] Initializing /data/stefan/001_q02.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 3 minutes 1 second
Finished: SUCCESS