Started by upstream project "BIOFORMATS-test-repo" build number 269
originally caused by:
Started by upstream project "Trigger" build number 292
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins7958969410757871912.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42459_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:29:16,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:29:16,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:29:16,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:29:16,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:29:16,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:29:16,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:29:16,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:29:16,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:29:16,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:29:16,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:29:16,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:29:16,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:29:17,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:29:17,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:29:17,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:29:17,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:29:17,146 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:29:17,147 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:29:17,147 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:29:17,147 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:29:17,147 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:29:17,148 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:29:17,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-27 00:29:17,156] [main] java.version = 17.0.2
[testng] 00:29:17,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:29:17,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:17,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_00-29-17.log]
[testng] 00:29:17,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-11-27 00:29:17,201] [main] testng.directory = /data
[testng] [2024-11-27 00:29:17,201] [main] testng.configDirectory = /config
[testng] [2024-11-27 00:29:17,209] [main] testng.multiplier = 1.0
[testng] [2024-11-27 00:29:17,210] [main] testng.in-memory = false
[testng] [2024-11-27 00:29:17,210] [main] testng.allow-missing = false
[testng] [2024-11-27 00:29:17,210] [main] user.language = en
[testng] [2024-11-27 00:29:17,211] [main] user.country = ${user.country}
[testng] [2024-11-27 00:29:17,211] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-27 00:34:08,171] [main] ----------------------------------------
[testng] [2024-11-27 00:34:08,171] [main] Total files: 226
[testng] [2024-11-27 00:34:08,171] [main] Scan time: 290.96 s (1287 ms/file)
[testng] [2024-11-27 00:34:08,171] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-27 00:38:23,863] [pool-1-thread-1] Initializing /data/fluoview/SpineAnimation.tif:
[testng] 00:38:23,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:38:23,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:23,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_00-38-23.log]
[testng] 00:38:23,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bed1ed0 - End of configuration.
[testng] [2024-11-27 00:38:24,295] [pool-1-thread-12] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] 00:38:24,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:38:24,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:24,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_00-38-24.log]
[testng] 00:38:24,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a291575 - End of configuration.
[testng] [2024-11-27 00:38:24,714] [pool-1-thread-11] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] 00:38:24,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:38:24,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:24,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_00-38-24.log]
[testng] 00:38:24,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1483c1a3 - End of configuration.
[testng] [2024-11-27 00:38:24,822] [pool-1-thread-10] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] 00:38:24,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:38:24,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:24,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_00-38-24.log]
[testng] 00:38:24,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24ae2e86 - End of configuration.
[testng] [2024-11-27 00:38:24,895] [pool-1-thread-9] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 00:38:24,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:38:24,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:24,896 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_00-38-24.log]
[testng] 00:38:24,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35c25fe9 - End of configuration.
[testng] [2024-11-27 00:38:24,971] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] 00:38:24,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:38:24,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:24,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_00-38-24.log]
[testng] 00:38:24,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32bc5080 - End of configuration.
[testng] [2024-11-27 00:38:25,382] [pool-1-thread-7] Initializing /data/iplab/Color Histology.IPL:
[testng] 00:38:25,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:38:25,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:25,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_00-38-25.log]
[testng] 00:38:25,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e5b4dca - End of configuration.
[testng] [2024-11-27 00:38:25,458] [pool-1-thread-6] Initializing /data/iplab/Blend_Final.IPL:
[testng] 00:38:25,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:38:25,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:25,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_00-38-25.log]
[testng] 00:38:25,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ee5ff5d - End of configuration.
[testng] [2024-11-27 00:38:25,536] [pool-1-thread-5] Initializing /data/fluoview/Sample_XT.tif:
[testng] 00:38:25,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:38:25,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:25,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_00-38-25.log]
[testng] 00:38:25,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18855e3f - End of configuration.
[testng] [2024-11-27 00:38:25,955] [pool-1-thread-4] Initializing /data/iplab/Blend_DIC.IPL:
[testng] 00:38:25,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:38:25,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:25,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_00-38-25.log]
[testng] 00:38:25,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79caa6f3 - End of configuration.
[testng] [2024-11-27 00:38:26,025] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] 00:38:26,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:38:26,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:26,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_00-38-26.log]
[testng] 00:38:26,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63b27e45 - End of configuration.
[testng] [2024-11-27 00:38:26,437] [pool-1-thread-2] Initializing /data/iplab/16Bit XRay.IPL:
[testng] 00:38:26,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:38:26,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:26,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_00-38-26.log]
[testng] 00:38:26,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e25a766 - End of configuration.
[testng] [2024-11-27 00:38:29,157] [pool-1-thread-2] Initializing /data/iplab/Actin.IPL:
[testng] [2024-11-27 00:38:29,219] [pool-1-thread-7] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] [2024-11-27 00:38:29,655] [pool-1-thread-6] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] [2024-11-27 00:38:30,116] [pool-1-thread-4] Initializing /data/iplab/3t3 Cell.IPL:
[testng] [2024-11-27 00:38:30,209] [pool-1-thread-9] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-11-27 00:38:30,374] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL:
[testng] [2024-11-27 00:38:30,445] [pool-1-thread-11] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-11-27 00:38:32,205] [pool-1-thread-10] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-11-27 00:38:32,888] [pool-1-thread-2] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] [2024-11-27 00:38:32,985] [pool-1-thread-4] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-11-27 00:38:33,071] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-11-27 00:38:33,562] [pool-1-thread-3] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-11-27 00:38:33,655] [pool-1-thread-11] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] [2024-11-27 00:38:34,225] [pool-1-thread-5] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-11-27 00:38:34,997] [pool-1-thread-1] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] [2024-11-27 00:38:36,294] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 minutes 30 seconds
Finished: SUCCESS