Started by upstream project "BIOFORMATS-test-repo" build number 269
originally caused by:
 Started by upstream project "Trigger" build number 292
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins7623325111167880908.sh
+ '[' imspector = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42554_merge_ci -v /uod/idr/repos/curated/imspector:/data -v /uod/idr-scratch/merge-ci/curated/imspector:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:59:33,168 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 03:59:33,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 03:59:33,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:59:33,171 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:59:33,171 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:59:33,171 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:59:33,172 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:59:33,172 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:59:33,172 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:59:33,173 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:59:33,173 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:59:33,173 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:59:33,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:59:33,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:59:33,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:59:33,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:59:33,366 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:59:33,367 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:59:33,367 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:59:33,367 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:59:33,367 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 03:59:33,368 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 03:59:33,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-27 03:59:33,377] [main] java.version = 17.0.2
   [testng] 03:59:33,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:59:33,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:33,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_03-59-33.log]
   [testng] 03:59:33,423 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-11-27 03:59:33,425] [main] testng.directory = /data
   [testng] [2024-11-27 03:59:33,425] [main] testng.configDirectory = /config
   [testng] [2024-11-27 03:59:33,434] [main] testng.multiplier = 1.0
   [testng] [2024-11-27 03:59:33,434] [main] testng.in-memory = false
   [testng] [2024-11-27 03:59:33,435] [main] testng.allow-missing = false
   [testng] [2024-11-27 03:59:33,435] [main] user.language = en
   [testng] [2024-11-27 03:59:33,435] [main] user.country = ${user.country}
   [testng] [2024-11-27 03:59:33,435] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-27 03:59:53,993] [main] ----------------------------------------
   [testng] [2024-11-27 03:59:53,993] [main] Total files: 29
   [testng] [2024-11-27 03:59:53,993] [main] Scan time: 20.558 s (708 ms/file)
   [testng] [2024-11-27 03:59:53,994] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 28 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-27 04:00:22,972] [pool-1-thread-1] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - Arf_FLIM_z-stack_1.msr: 
   [testng] 04:00:22,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 04:00:22,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:00:22,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_04-00-22.log]
   [testng] 04:00:22,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ab65d92 - End of configuration.
   [testng] [2024-11-27 04:00:23,568] [pool-1-thread-12] Initializing /data/qa-11369/01 - 770nm FITC - HybridPMT.msr: 
   [testng] 04:00:23,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 04:00:23,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:00:23,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_04-00-23.log]
   [testng] 04:00:23,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e9a5f43 - End of configuration.
   [testng] [2024-11-27 04:00:24,162] [pool-1-thread-11] Initializing /data/paul/msr files - Paul Thomas UEA/Lifetime file.msr: 
   [testng] 04:00:24,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 04:00:24,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:00:24,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_04-00-24.log]
   [testng] 04:00:24,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71c0d3fa - End of configuration.
   [testng] [2024-11-27 04:00:24,935] [pool-1-thread-10] Initializing /data/qa-7936/01 - working.msr: 
   [testng] 04:00:24,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 04:00:24,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:00:24,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_04-00-24.log]
   [testng] 04:00:24,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40dac40d - End of configuration.
   [testng] [2024-11-27 04:00:25,835] [pool-1-thread-9] Initializing /data/qa-9468/HPDR10467U-40-VD0191-red-100pc-without-tube.msr: 
   [testng] 04:00:25,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 04:00:25,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:00:25,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_04-00-25.log]
   [testng] 04:00:25,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b9a3531 - End of configuration.
   [testng] [2024-11-27 04:00:26,703] [pool-1-thread-8] Initializing /data/qa-27309/181109_e3_cut.msr: 
   [testng] 04:00:26,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 04:00:26,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:00:26,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_04-00-26.log]
   [testng] 04:00:26,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10b56cf9 - End of configuration.
   [testng] [2024-11-27 04:00:27,555] [pool-1-thread-7] Initializing /data/qa-17102/1 channel binning 8 time series.msr: 
   [testng] 04:00:27,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 04:00:27,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:00:27,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_04-00-27.log]
   [testng] 04:00:27,557 |-INFO in ch.qos.logback.core.sift.SiftProcessor@472f748f - End of configuration.
   [testng] [2024-11-27 04:00:28,318] [pool-1-thread-6] Initializing /data/qa-7992/ArrayIndexOutOfBoundsException.msr: 
   [testng] 04:00:28,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 04:00:28,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:00:28,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_04-00-28.log]
   [testng] 04:00:28,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b429b3e - End of configuration.
   [testng] [2024-11-27 04:00:29,088] [pool-1-thread-5] Initializing /data/qa-7936/02 - not working.msr: 
   [testng] 04:00:29,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 04:00:29,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:00:29,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_04-00-29.log]
   [testng] 04:00:29,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32e0fa2c - End of configuration.
   [testng] [2024-11-27 04:00:29,630] [pool-1-thread-4] Initializing /data/qa-17102/2 channels FLIM time series.msr: 
   [testng] 04:00:29,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 04:00:29,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:00:29,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_04-00-29.log]
   [testng] 04:00:29,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ec4125 - End of configuration.
   [testng] [2024-11-27 04:00:30,323] [pool-1-thread-3] Initializing /data/qa-7702/trim- scope msr z-stacks/02 -  500x500x105_1046x1046x57_1.875um_steps.msr: 
   [testng] 04:00:30,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 04:00:30,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:00:30,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_04-00-30.log]
   [testng] 04:00:30,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7930554a - End of configuration.
   [testng] [2024-11-27 04:00:31,021] [pool-1-thread-2] Initializing /data/qa-7668/01 - RhodamineB - FLIM test - 4 binning_12-08-53_TCSPC_C0.ome.tif: 
   [testng] 04:00:31,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 04:00:31,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:00:31,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_04-00-31.log]
   [testng] 04:00:31,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37d8c734 - End of configuration.
   [testng] [2024-11-27 04:00:39,700] [pool-1-thread-8] Initializing /data/paul/msr files - Paul Thomas UEA/Two channel single slice.msr: 
   [testng] [2024-11-27 04:00:40,325] [pool-1-thread-9] Initializing /data/paul/msr files - Paul Thomas UEA/Two channel Zstack.msr: 
   [testng] [2024-11-27 04:00:40,910] [pool-1-thread-3] Initializing /data/paul/msr files - Paul Thomas UEA/Single channel Zstack.msr: 
   [testng] [2024-11-27 04:00:41,558] [pool-1-thread-11] Initializing /data/qa-7992/IllegalArgumentException.msr: 
   [testng] [2024-11-27 04:00:42,335] [pool-1-thread-7] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - Arf_z-stack_FLIM_TDC_C0.ome.tif: 
   [testng] [2024-11-27 04:00:43,388] [pool-1-thread-1] Initializing /data/qa-7658/Document1_13-09-25.msr: 
   [testng] [2024-11-27 04:00:43,957] [pool-1-thread-4] Initializing /data/paul/msr files - Paul Thomas UEA/Single channel single slice 4 tiles.msr: 
   [testng] [2024-11-27 04:00:44,412] [pool-1-thread-10] Initializing /data/qa-17102/2 channels FLIM z stack.msr: 
   [testng] [2024-11-27 04:00:44,885] [pool-1-thread-12] Initializing /data/qa-7936/z-TC - for LOCI.msr: 
   [testng] [2024-11-27 04:00:45,399] [pool-1-thread-5] Initializing /data/qa-17102/1 channel binning 4 time series.msr: 
   [testng] [2024-11-27 04:00:45,885] [pool-1-thread-6] Initializing /data/qa-4929/OMERO data/01 - urea_irf_image_TCSPC-data.msr: 
   [testng] [2024-11-27 04:00:47,382] [pool-1-thread-2] Initializing /data/qa-11369/02 - 70 - 1 - tp1 - x16 TCSPC.msr: 
   [testng] [2024-11-27 04:00:52,882] [pool-1-thread-8] Initializing /data/qa-4929/OMERO data/01 - 27hpf_f2-GFP-wt1b+rfp-flk1 - 3channel-z-stack.msr: 
   [testng] [2024-11-27 04:00:53,494] [pool-1-thread-9] Initializing /data/qa-7702/trim- scope msr z-stacks/02 -  500x500x105_1046x1046x57_1.875um_steps/02 -  500x500x105_1046x1046x57_1_875um_steps_11-34-02_PMT - PMT [PMT1] _C0.ome.tif: 
   [testng] [2024-11-27 04:00:56,699] [pool-1-thread-10] Initializing /data/qa-7668/01 - RhodamineB - FLIM test - 4 binning.msr: 
   [testng] [2024-11-27 04:00:57,392] [pool-1-thread-5] Initializing /data/qa-7992/NegativeArraySizeException_small.msr: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1484, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 50 seconds
Finished: SUCCESS