Started by upstream project "BIOFORMATS-test-repo" build number 271 originally caused by: Started by upstream project "Trigger" build number 293 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins9101174782777573608.sh + '[' lim = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42646_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:23:18,682 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:23:18,683 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:23:18,683 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:18,684 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:18,685 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:23:18,685 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:23:18,685 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:23:18,685 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:18,686 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:18,686 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:23:18,686 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:23:18,687 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:23:18,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:23:18,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:23:18,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:23:18,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:23:18,871 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:23:18,871 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:23:18,871 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:23:18,871 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:23:18,871 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:23:18,872 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:23:18,872 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-28 00:23:18,881] [main] java.version = 21 [testng] 00:23:18,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:23:18,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:18,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-28_00-23-18.log] [testng] 00:23:18,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-28 00:23:18,930] [main] testng.directory = /data [testng] [2024-11-28 00:23:18,930] [main] testng.configDirectory = /config [testng] [2024-11-28 00:23:18,938] [main] testng.multiplier = 1.0 [testng] [2024-11-28 00:23:18,939] [main] testng.in-memory = false [testng] [2024-11-28 00:23:18,939] [main] testng.allow-missing = false [testng] [2024-11-28 00:23:18,939] [main] user.language = en [testng] [2024-11-28 00:23:18,939] [main] user.country = ${user.country} [testng] [2024-11-28 00:23:18,939] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-28 00:23:19,395] [main] ---------------------------------------- [testng] [2024-11-28 00:23:19,396] [main] Total files: 21 [testng] [2024-11-28 00:23:19,396] [main] Scan time: 0.456 s (21 ms/file) [testng] [2024-11-28 00:23:19,396] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-28 00:23:25,852] [pool-1-thread-1] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:23:25,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:23:25,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:25,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-28_00-23-25.log] [testng] 00:23:25,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@617d96c5 - End of configuration. [testng] [2024-11-28 00:23:26,136] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 00:23:26,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:23:26,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:26,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-28_00-23-26.log] [testng] 00:23:26,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f395f6 - End of configuration. [testng] [2024-11-28 00:23:26,422] [pool-1-thread-11] Initializing /data/venu/Kontrolle0017.lim: [testng] 00:23:26,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:23:26,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:26,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-28_00-23-26.log] [testng] 00:23:26,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b7e14b1 - End of configuration. [testng] [2024-11-28 00:23:26,700] [pool-1-thread-10] Initializing /data/venu/Kontrolle0007.lim: [testng] 00:23:26,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:23:26,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:26,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-28_00-23-26.log] [testng] 00:23:26,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a5ee39c - End of configuration. [testng] [2024-11-28 00:23:26,979] [pool-1-thread-9] Initializing /data/venu/Kontrolle0013.lim: [testng] 00:23:26,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:23:26,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:26,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-28_00-23-26.log] [testng] 00:23:26,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c8ecd7a - End of configuration. [testng] [2024-11-28 00:23:27,268] [pool-1-thread-8] Initializing /data/venu/Kontrolle0012.lim: [testng] 00:23:27,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:23:27,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:27,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-28_00-23-27.log] [testng] 00:23:27,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b2a7d18 - End of configuration. [testng] [2024-11-28 00:23:27,557] [pool-1-thread-7] Initializing /data/venu/Kontrolle0018.lim: [testng] 00:23:27,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:23:27,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:27,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-28_00-23-27.log] [testng] 00:23:27,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b460e5e - End of configuration. [testng] [2024-11-28 00:23:27,817] [pool-1-thread-6] Initializing /data/venu/Kontrolle0002.lim: [testng] 00:23:27,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:23:27,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:27,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-28_00-23-27.log] [testng] 00:23:27,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74db2791 - End of configuration. [testng] [2024-11-28 00:23:28,107] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim: [testng] 00:23:28,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:23:28,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:28,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-28_00-23-28.log] [testng] 00:23:28,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58da4d70 - End of configuration. [testng] [2024-11-28 00:23:28,396] [pool-1-thread-4] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:23:28,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:23:28,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:28,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-28_00-23-28.log] [testng] 00:23:28,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fedd066 - End of configuration. [testng] [2024-11-28 00:23:28,690] [pool-1-thread-3] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:23:28,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:23:28,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:28,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-28_00-23-28.log] [testng] 00:23:28,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50de7fe1 - End of configuration. [testng] [2024-11-28 00:23:28,996] [pool-1-thread-2] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:23:28,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:23:28,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:28,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-28_00-23-28.log] [testng] 00:23:28,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@105f67d1 - End of configuration. [testng] [2024-11-28 00:23:34,886] [pool-1-thread-3] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-11-28 00:23:35,207] [pool-1-thread-9] Initializing /data/venu/Kontrolle0008.lim: [testng] [2024-11-28 00:23:35,493] [pool-1-thread-12] Initializing /data/venu/Kontrolle0005.lim: [testng] [2024-11-28 00:23:35,777] [pool-1-thread-1] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-11-28 00:23:36,066] [pool-1-thread-10] Initializing /data/venu/Kontrolle0016.lim: [testng] [2024-11-28 00:23:36,349] [pool-1-thread-8] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-11-28 00:23:36,647] [pool-1-thread-5] Initializing /data/venu/Kontrolle0001.lim: [testng] [2024-11-28 00:23:36,939] [pool-1-thread-11] Initializing /data/venu/Kontrolle0015.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 25 seconds Finished: SUCCESS