Started by upstream project "BIOFORMATS-test-repo" build number 271
originally caused by:
Started by upstream project "Trigger" build number 293
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins18265963988683320198.sh
+ '[' sxm = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42720_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:14:17,888 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:14:17,890 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 02:14:17,890 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:14:17,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:14:17,892 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:14:17,892 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:14:17,893 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:14:17,893 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:14:17,893 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:14:17,894 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:14:17,894 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:14:17,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:14:18,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:14:18,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:14:18,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:14:18,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:14:18,092 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:14:18,092 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:14:18,092 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:14:18,092 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:14:18,092 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 02:14:18,093 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 02:14:18,093 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-28 02:14:18,102] [main] java.version = 21
[testng] 02:14:18,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:14:18,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:18,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-28_02-14-18.log]
[testng] 02:14:18,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-11-28 02:14:18,149] [main] testng.directory = /data
[testng] [2024-11-28 02:14:18,149] [main] testng.configDirectory = /config
[testng] [2024-11-28 02:14:18,158] [main] testng.multiplier = 1.0
[testng] [2024-11-28 02:14:18,159] [main] testng.in-memory = false
[testng] [2024-11-28 02:14:18,159] [main] testng.allow-missing = false
[testng] [2024-11-28 02:14:18,159] [main] user.language = en
[testng] [2024-11-28 02:14:18,159] [main] user.country = ${user.country}
[testng] [2024-11-28 02:14:18,159] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-28 02:17:38,053] [main] ----------------------------------------
[testng] [2024-11-28 02:17:38,053] [main] Total files: 268
[testng] [2024-11-28 02:17:38,054] [main] Scan time: 199.894 s (745 ms/file)
[testng] [2024-11-28 02:17:38,054] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 160 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-28 02:23:49,439] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles:
[testng] 02:23:49,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:23:49,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:49,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-28_02-23-49.log]
[testng] 02:23:49,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f0d3485 - End of configuration.
[testng] [2024-11-28 02:23:51,287] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR:
[testng] 02:23:51,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:23:51,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:51,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-28_02-23-51.log]
[testng] 02:23:51,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23acec7d - End of configuration.
[testng] [2024-11-28 02:23:51,804] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG:
[testng] 02:23:51,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:23:51,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:51,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-28_02-23-51.log]
[testng] 02:23:51,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@597c647e - End of configuration.
[testng] [2024-11-28 02:23:52,631] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI:
[testng] 02:23:52,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:23:52,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:52,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-28_02-23-52.log]
[testng] 02:23:52,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ca488d0 - End of configuration.
[testng] [2024-11-28 02:23:53,173] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2:
[testng] 02:23:53,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:23:53,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:53,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-28_02-23-53.log]
[testng] 02:23:53,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f4bd3f2 - End of configuration.
[testng] [2024-11-28 02:23:53,712] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR:
[testng] 02:23:53,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:23:53,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:53,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-28_02-23-53.log]
[testng] 02:23:53,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24740e7c - End of configuration.
[testng] [2024-11-28 02:23:54,250] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk:
[testng] 02:23:54,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:23:54,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:54,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-28_02-23-54.log]
[testng] 02:23:54,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ac4da3a - End of configuration.
[testng] [2024-11-28 02:23:55,177] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3:
[testng] 02:23:55,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:23:55,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:55,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-28_02-23-55.log]
[testng] 02:23:55,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3159d662 - End of configuration.
[testng] [2024-11-28 02:23:55,709] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR:
[testng] 02:23:55,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:23:55,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:55,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-28_02-23-55.log]
[testng] 02:23:55,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51cffc54 - End of configuration.
[testng] [2024-11-28 02:23:56,221] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG:
[testng] 02:23:56,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:23:56,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:56,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-28_02-23-56.log]
[testng] 02:23:56,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@120def1a - End of configuration.
[testng] [2024-11-28 02:23:56,986] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-31.IMG:
[testng] 02:23:56,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:23:56,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:56,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-28_02-23-56.log]
[testng] 02:23:56,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@229caa90 - End of configuration.
[testng] [2024-11-28 02:23:57,641] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG:
[testng] 02:23:57,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:23:57,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:57,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-28_02-23-57.log]
[testng] 02:23:57,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4998a435 - End of configuration.
[testng] [2024-11-28 02:24:05,364] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img:
[testng] [2024-11-28 02:24:07,683] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict:
[testng] [2024-11-28 02:24:08,303] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm:
[testng] [2024-11-28 02:24:08,901] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP:
[testng] [2024-11-28 02:24:09,564] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4:
[testng] [2024-11-28 02:24:09,901] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img:
[testng] [2024-11-28 02:24:11,991] [pool-1-thread-8] Initializing /data/steve/FITS/M13.fits:
[testng] [2024-11-28 02:24:12,223] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF:
[testng] [2024-11-28 02:24:16,488] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP:
[testng] [2024-11-28 02:24:17,996] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP:
[testng] [2024-11-28 02:24:18,914] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3:
[testng] [2024-11-28 02:24:22,460] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG:
[testng] [2024-11-28 02:24:23,545] [pool-1-thread-11] Initializing /data/steve/Targa/Test.TGA:
[testng] [2024-11-28 02:24:24,053] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF:
[testng] [2024-11-28 02:24:26,237] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt):
[testng] [2024-11-28 02:24:29,098] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS:
[testng] [2024-11-28 02:24:29,883] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm:
[testng] [2024-11-28 02:24:34,864] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts:
[testng] [2024-11-28 02:24:35,190] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif:
[testng] [2024-11-28 02:24:37,923] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2:
[testng] [2024-11-28 02:24:43,086] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm:
[testng] [2024-11-28 02:24:44,289] [pool-1-thread-5] Initializing /data/steve/FITS/M51.fits:
[testng] [2024-11-28 02:24:44,511] [pool-1-thread-9] Initializing /data/steve/TIFF/HAFF SEM:
[testng] [2024-11-28 02:24:46,887] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img:
[testng] [2024-11-28 02:24:49,745] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2:
[testng] [2024-11-28 02:24:50,324] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts:
[testng] [2024-11-28 02:24:50,641] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif:
[testng] [2024-11-28 02:24:54,986] [pool-1-thread-5] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF:
[testng] [2024-11-28 02:24:58,976] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2:
[testng] [2024-11-28 02:24:59,853] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test:
[testng] [2024-11-28 02:25:03,758] [pool-1-thread-4] Initializing /data/steve/TIFF/CONCRETE TIFF:
[testng] [2024-11-28 02:25:06,670] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP:
[testng] [2024-11-28 02:25:07,956] [pool-1-thread-3] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG:
[testng] [2024-11-28 02:25:09,421] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif:
[testng] [2024-11-28 02:25:12,358] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd:
[testng] [2024-11-28 02:25:14,890] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif:
[testng] [2024-11-28 02:25:17,498] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm:
[testng] [2024-11-28 02:25:19,523] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP:
[testng] [2024-11-28 02:25:20,714] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif:
[testng] [2024-11-28 02:25:23,405] [pool-1-thread-9] Initializing /data/steve/SBIG/M81 H 250s Tr=5s:
[testng] [2024-11-28 02:25:26,324] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif:
[testng] [2024-11-28 02:25:27,293] [pool-1-thread-1] Initializing /data/steve/TIFF/8MAR03A.TIFF:
[testng] [2024-11-28 02:25:29,468] [pool-1-thread-3] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC:
[testng] [2024-11-28 02:25:30,638] [pool-1-thread-2] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX:
[testng] [2024-11-28 02:25:32,873] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF:
[testng] [2024-11-28 02:25:36,646] [pool-1-thread-8] Initializing /data/steve/UBM (Rosset)/SG2.PR3:
[testng] [2024-11-28 02:25:38,639] [pool-1-thread-6] Initializing /data/steve/SBIG/M82 H 100s Tr=10s:
[testng] [2024-11-28 02:25:41,014] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP:
[testng] [2024-11-28 02:25:41,729] [pool-1-thread-4] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM:
[testng] [2024-11-28 02:25:43,976] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict:
[testng] [2024-11-28 02:25:44,872] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict:
[testng] [2024-11-28 02:25:45,750] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee:
[testng] [2024-11-28 02:25:48,973] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG:
[testng] [2024-11-28 02:25:50,381] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG:
[testng] [2024-11-28 02:25:52,164] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR:
[testng] [2024-11-28 02:25:52,955] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr:
[testng] [2024-11-28 02:25:53,710] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3:
[testng] [2024-11-28 02:25:54,044] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack:
[testng] [2024-11-28 02:25:56,036] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict:
[testng] [2024-11-28 02:25:56,487] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5:
[testng] [2024-11-28 02:25:56,850] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2:
[testng] [2024-11-28 02:25:58,856] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm:
[testng] [2024-11-28 02:26:02,098] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS:
[testng] [2024-11-28 02:26:03,306] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi:
[testng] [2024-11-28 02:26:05,487] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm:
[testng] [2024-11-28 02:26:06,338] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT:
[testng] [2024-11-28 02:26:07,042] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2:
[testng] [2024-11-28 02:26:07,738] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF:
[testng] [2024-11-28 02:26:10,007] [pool-1-thread-1] Initializing /data/steve/SM-Camera/Orhan + IPES rig:
[testng] [2024-11-28 02:26:12,559] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF:
[testng] [2024-11-28 02:26:15,169] [pool-1-thread-3] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd:
[testng] [2024-11-28 02:26:15,911] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd:
[testng] [2024-11-28 02:26:17,246] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm:
[testng] [2024-11-28 02:26:20,789] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/BGND.DTI:
[testng] [2024-11-28 02:26:22,659] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2:
[testng] [2024-11-28 02:26:23,552] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2:
[testng] [2024-11-28 02:26:24,413] [pool-1-thread-12] Initializing /data/steve/FITS/M104.fits:
[testng] [2024-11-28 02:26:24,847] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry):
[testng] [2024-11-28 02:26:25,345] [pool-1-thread-8] Initializing /data/steve/TIFF/Little owl TIFF:
[testng] [2024-11-28 02:26:27,517] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-30.IMG:
[testng] [2024-11-28 02:26:28,027] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS:
[testng] [2024-11-28 02:26:30,014] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG:
[testng] [2024-11-28 02:26:32,940] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm:
[testng] [2024-11-28 02:26:33,828] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG:
[testng] [2024-11-28 02:26:35,447] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR:
[testng] [2024-11-28 02:26:36,161] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE:
[testng] [2024-11-28 02:26:36,622] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2:
[testng] [2024-11-28 02:26:37,218] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-32.IMG:
[testng] [2024-11-28 02:26:37,739] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2:
[testng] [2024-11-28 02:26:38,314] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF:
[testng] [2024-11-28 02:26:40,700] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2:
[testng] [2024-11-28 02:26:41,532] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/302.TIF:
[testng] [2024-11-28 02:26:46,866] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm:
[testng] [2024-11-28 02:26:49,177] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-33.IMG:
[testng] [2024-11-28 02:26:50,983] [pool-1-thread-1] Initializing /data/steve/TIFF/CD-ROM TIFF:
[testng] [2024-11-28 02:26:53,378] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3:
[testng] [2024-11-28 02:26:53,709] [pool-1-thread-8] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV:
[testng] [2024-11-28 02:26:55,730] [pool-1-thread-12] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM:
[testng] [2024-11-28 02:26:57,199] [pool-1-thread-5] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR:
[testng] [2024-11-28 02:26:58,439] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif:
[testng] [2024-11-28 02:27:01,184] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm:
[testng] [2024-11-28 02:27:02,245] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP:
[testng] [2024-11-28 02:27:05,933] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf:
[testng] [2024-11-28 02:27:07,900] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS:
[testng] [2024-11-28 02:27:09,182] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top:
[testng] [2024-11-28 02:27:10,478] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif:
[testng] [2024-11-28 02:27:13,142] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif:
[testng] [2024-11-28 02:27:17,296] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp:
[testng] [2024-11-28 02:27:18,718] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm:
[testng] [2024-11-28 02:27:20,084] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF:
[testng] [2024-11-28 02:27:23,353] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk:
[testng] [2024-11-28 02:27:24,895] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG:
[testng] [2024-11-28 02:27:28,036] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF:
[testng] [2024-11-28 02:27:31,536] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test:
[testng] [2024-11-28 02:27:34,200] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif:
[testng] [2024-11-28 02:27:35,312] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm:
[testng] [2024-11-28 02:27:36,637] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm:
[testng] [2024-11-28 02:27:39,928] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm:
[testng] [2024-11-28 02:27:44,267] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG:
[testng] [2024-11-28 02:27:45,669] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm:
[testng] [2024-11-28 02:27:47,334] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2:
[testng] [2024-11-28 02:27:48,534] [pool-1-thread-4] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk:
[testng] [2024-11-28 02:27:50,483] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3:
[testng] [2024-11-28 02:27:52,422] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3:
[testng] [2024-11-28 02:27:53,638] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3:
[testng] [2024-11-28 02:27:54,302] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP:
[testng] [2024-11-28 02:27:55,400] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF:
[testng] [2024-11-28 02:28:00,189] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr:
[testng] [2024-11-28 02:28:01,209] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.IMG:
[testng] [2024-11-28 02:28:02,090] [pool-1-thread-2] Initializing /data/steve/TIFF/Hough test TIFF:
[testng] [2024-11-28 02:28:04,574] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS:
[testng] [2024-11-28 02:28:05,319] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts:
[testng] [2024-11-28 02:28:05,541] [pool-1-thread-5] Initializing /data/steve/TIFF/ta269 TIFF:
[testng] [2024-11-28 02:28:08,042] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY:
[testng] [2024-11-28 02:28:10,691] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A:
[testng] [2024-11-28 02:28:11,245] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2:
[testng] [2024-11-28 02:28:12,317] [pool-1-thread-4] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top:
[testng] [2024-11-28 02:28:13,275] [pool-1-thread-11] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT:
[testng] [2024-11-28 02:28:14,866] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC:
[testng] [2024-11-28 02:28:16,206] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif:
[testng] [2024-11-28 02:28:19,433] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Graphite:
[testng] [2024-11-28 02:28:24,353] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif:
[testng] [2024-11-28 02:28:27,211] [pool-1-thread-3] Initializing /data/steve/TIFF/ta123 stack TIFF:
[testng] [2024-11-28 02:28:30,215] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL:
[testng] [2024-11-28 02:28:31,894] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2:
[testng] [2024-11-28 02:28:32,506] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG:
[testng] [2024-11-28 02:28:34,049] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS:
[testng] [2024-11-28 02:28:35,826] [pool-1-thread-1] Initializing /data/steve/SBIG/M81 M 40s:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 8480, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 14 minutes 38 seconds
Finished: SUCCESS