Started by upstream project "BIOFORMATS-test-repo" build number 271
originally caused by:
Started by upstream project "Trigger" build number 293
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins17678419827645901152.sh
+ '[' imaris = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42748_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 03:59:53,696 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:59:53,697 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 03:59:53,697 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:59:53,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:59:53,699 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:59:53,699 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:59:53,699 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:59:53,699 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:59:53,700 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:59:53,700 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:59:53,701 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:59:53,701 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:59:53,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:59:53,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:59:53,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:59:53,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:59:53,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:59:53,885 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:59:53,885 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:59:53,885 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:59:53,885 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 03:59:53,886 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 03:59:53,886 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-28 03:59:53,895] [main] java.version = 21
[testng] 03:59:53,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:59:53,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:59:53,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-28_03-59-53.log]
[testng] 03:59:53,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-11-28 03:59:53,941] [main] testng.directory = /data
[testng] [2024-11-28 03:59:53,941] [main] testng.configDirectory = /config
[testng] [2024-11-28 03:59:53,949] [main] testng.multiplier = 1.0
[testng] [2024-11-28 03:59:53,950] [main] testng.in-memory = false
[testng] [2024-11-28 03:59:53,951] [main] testng.allow-missing = false
[testng] [2024-11-28 03:59:53,951] [main] user.language = en
[testng] [2024-11-28 03:59:53,951] [main] user.country = ${user.country}
[testng] [2024-11-28 03:59:53,951] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-28 04:00:42,974] [main] ----------------------------------------
[testng] [2024-11-28 04:00:42,974] [main] Total files: 71
[testng] [2024-11-28 04:00:42,974] [main] Scan time: 49.023 s (690 ms/file)
[testng] [2024-11-28 04:00:42,974] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 62 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-28 04:02:02,827] [pool-1-thread-1] Initializing /data/generated/10-31_E_t0001.ims:
[testng] 04:02:02,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:02:02,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:02:02,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-28_04-02-02.log]
[testng] 04:02:02,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64fd2b80 - End of configuration.
[testng] [2024-11-28 04:02:03,068] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0010.ims:
[testng] 04:02:03,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:02:03,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:02:03,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-28_04-02-03.log]
[testng] 04:02:03,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d190e1f - End of configuration.
[testng] [2024-11-28 04:02:03,303] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0013.ims:
[testng] 04:02:03,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:02:03,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:02:03,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-28_04-02-03.log]
[testng] 04:02:03,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@560e18dd - End of configuration.
[testng] [2024-11-28 04:02:03,525] [pool-1-thread-10] Initializing /data/gh-4193/24-5-9_RSV+AfumMscar+CFW_40x Stack_deconvolved.ims:
[testng] 04:02:03,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:02:03,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:02:03,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-28_04-02-03.log]
[testng] 04:02:03,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fe08ddd - End of configuration.
[testng] [2024-11-28 04:02:05,469] [pool-1-thread-9] Initializing /data/oliver/Stack2_8Bit.ims:
[testng] 04:02:05,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:02:05,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:02:05,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-28_04-02-05.log]
[testng] 04:02:05,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e30bd1 - End of configuration.
[testng] [2024-11-28 04:02:06,124] [pool-1-thread-8] Initializing /data/generated/10-31_E_t0006.ims:
[testng] 04:02:06,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:02:06,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:02:06,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-28_04-02-06.log]
[testng] 04:02:06,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3496ff6d - End of configuration.
[testng] [2024-11-28 04:02:06,363] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0000.ims:
[testng] 04:02:06,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:02:06,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:02:06,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-28_04-02-06.log]
[testng] 04:02:06,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cdfec3 - End of configuration.
[testng] [2024-11-28 04:02:06,615] [pool-1-thread-6] Initializing /data/generated/MF-2CH-Z-T.ims:
[testng] 04:02:06,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:02:06,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:02:06,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-28_04-02-06.log]
[testng] 04:02:06,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c975cd0 - End of configuration.
[testng] [2024-11-28 04:02:06,852] [pool-1-thread-5] Initializing /data/jason/imaris_5_5_demoimages/SwimmingAlgae.ims:
[testng] 04:02:06,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:02:06,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:02:06,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-28_04-02-06.log]
[testng] 04:02:06,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4726a00c - End of configuration.
[testng] [2024-11-28 04:02:07,448] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0003.ims:
[testng] 04:02:07,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:02:07,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:02:07,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-28_04-02-07.log]
[testng] 04:02:07,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6de4e2 - End of configuration.
[testng] [2024-11-28 04:02:07,690] [pool-1-thread-3] Initializing /data/qa-17839/Fusion_2048_2048_50_1_Acquire.ims:
[testng] 04:02:07,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:02:07,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:02:07,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-28_04-02-07.log]
[testng] 04:02:07,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ede5805 - End of configuration.
[testng] [2024-11-28 04:02:08,605] [pool-1-thread-2] Initializing /data/public/davemason/Convallaria_3C_3T_2x2grid_confocal_IMS3.ims:
[testng] 04:02:08,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:02:08,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:02:08,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-28_04-02-08.log]
[testng] 04:02:08,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17479732 - End of configuration.
[testng] [2024-11-28 04:02:13,238] [pool-1-thread-6] Initializing /data/jason/imaris_5_5_demoimages/R18Demo.ims:
[testng] [2024-11-28 04:02:13,825] [pool-1-thread-11] Initializing /data/public/eliana/retina_large.ims:
[testng] [2024-11-28 04:02:15,121] [pool-1-thread-4] Initializing /data/jcb/fig 6B GFP-AP-2d.ims:
[testng] [2024-11-28 04:02:16,448] [pool-1-thread-7] Initializing /data/qa-17522/2016-07-26_17.11.03_Sample Prefix_5P298C2_Protocol.ims:
[testng] [2024-11-28 04:02:17,133] [pool-1-thread-1] Initializing /data/kay/Imaris503_test_Kay.ims:
[testng] [2024-11-28 04:02:17,736] [pool-1-thread-8] Initializing /data/generated/10-31_E_t0014.ims:
[testng] [2024-11-28 04:02:17,976] [pool-1-thread-12] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal.ims:
BUILD SUCCESSFUL
Total time: 4 minutes 13 seconds
Finished: SUCCESS