Started by upstream project "BIOFORMATS-test-repo" build number 272
originally caused by:
Started by upstream project "Trigger" build number 294
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins148211347983732271.sh
+ '[' zip = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42817_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:27:20,085 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:27:20,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:27:20,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:27:20,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:27:20,088 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:27:20,088 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:27:20,089 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:27:20,089 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:27:20,089 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:27:20,089 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:27:20,089 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:27:20,089 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:27:20,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:27:20,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:27:20,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:27:20,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:27:20,359 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:27:20,360 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:27:20,360 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:27:20,360 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:27:20,360 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:27:20,361 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:27:20,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 272 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-29 00:27:20,371] [main] java.version = 1.8.0_342
[testng] 00:27:20,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:27:20,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:20,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_00-27-20.log]
[testng] 00:27:20,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-29 00:27:20,423] [main] testng.directory = /data
[testng] [2024-11-29 00:27:20,424] [main] testng.configDirectory = /config
[testng] [2024-11-29 00:27:20,437] [main] testng.multiplier = 1.0
[testng] [2024-11-29 00:27:20,437] [main] testng.in-memory = false
[testng] [2024-11-29 00:27:20,437] [main] testng.allow-missing = false
[testng] [2024-11-29 00:27:20,437] [main] user.language = en
[testng] [2024-11-29 00:27:20,437] [main] user.country = ${user.country}
[testng] [2024-11-29 00:27:20,438] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-29 00:27:21,386] [main] ----------------------------------------
[testng] [2024-11-29 00:27:21,386] [main] Total files: 22
[testng] [2024-11-29 00:27:21,386] [main] Scan time: 0.948 s (43 ms/file)
[testng] [2024-11-29 00:27:21,386] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 22 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-29 00:29:17,529] [pool-1-thread-1] Initializing /data/samples/sdub.zip:
[testng] 00:29:17,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:29:17,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:17,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_00-29-17.log]
[testng] 00:29:17,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@444c1560 - End of configuration.
[testng] [2024-11-29 00:29:18,978] [pool-1-thread-12] Initializing /data/imagej/mri-stack.zip:
[testng] 00:29:18,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:29:18,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:18,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_00-29-18.log]
[testng] 00:29:18,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cec00a3 - End of configuration.
[testng] [2024-11-29 00:29:21,720] [pool-1-thread-11] Initializing /data/imagej/hela-cells.zip:
[testng] 00:29:21,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:29:21,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:21,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_00-29-21.log]
[testng] 00:29:21,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53c0e667 - End of configuration.
[testng] [2024-11-29 00:29:25,458] [pool-1-thread-10] Initializing /data/imagej/watershed-animation.zip:
[testng] 00:29:25,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:29:25,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:25,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_00-29-25.log]
[testng] 00:29:25,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@170b84df - End of configuration.
[testng] [2024-11-29 00:29:27,949] [pool-1-thread-9] Initializing /data/imagej/4D-Stack(256x256x20x10).zip:
[testng] 00:29:27,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:29:27,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:27,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_00-29-27.log]
[testng] 00:29:27,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bb5497c - End of configuration.
[testng] [2024-11-29 00:29:38,974] [pool-1-thread-8] Initializing /data/imagej/gel-electrophoresis.zip:
[testng] 00:29:38,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:29:38,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:38,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_00-29-38.log]
[testng] 00:29:38,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6428f935 - End of configuration.
[testng] [2024-11-29 00:29:42,940] [pool-1-thread-7] Initializing /data/imagej/cheetah_256_8.tif.zip:
[testng] 00:29:42,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:29:42,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:42,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_00-29-42.log]
[testng] 00:29:42,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b445217 - End of configuration.
[testng] [2024-11-29 00:29:48,337] [pool-1-thread-6] Initializing /data/imagej/xrays.zip:
[testng] 00:29:48,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:29:48,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:48,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_00-29-48.log]
[testng] 00:29:48,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d1c8f4e - End of configuration.
[testng] [2024-11-29 00:29:52,064] [pool-1-thread-5] Initializing /data/imagej/confocal-stack.zip:
[testng] 00:29:52,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:29:52,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:52,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_00-29-52.log]
[testng] 00:29:52,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77bbb8cb - End of configuration.
[testng] [2024-11-29 00:30:04,597] [pool-1-thread-4] Initializing /data/imagej/FluorescentCells.zip:
[testng] 00:30:04,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:30:04,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:04,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_00-30-04.log]
[testng] 00:30:04,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48bfcd3b - End of configuration.
[testng] [2024-11-29 00:30:07,484] [pool-1-thread-3] Initializing /data/imagej/fat-cells.zip:
[testng] 00:30:07,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:30:07,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:07,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_00-30-07.log]
[testng] 00:30:07,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5edf833a - End of configuration.
[testng] [2024-11-29 00:30:12,636] [pool-1-thread-2] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip:
[testng] 00:30:12,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:30:12,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:12,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_00-30-12.log]
[testng] 00:30:12,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@121ec111 - End of configuration.
[testng] [2024-11-29 00:30:32,769] [pool-1-thread-1] Initializing /data/imagej/se3.zip:
[testng] [2024-11-29 00:30:54,725] [pool-1-thread-6] Initializing /data/imagej/RatBrain.zip:
[testng] [2024-11-29 00:31:03,978] [pool-1-thread-10] Initializing /data/imagej/blood-brain-barrier.zip:
[testng] [2024-11-29 00:31:13,967] [pool-1-thread-12] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip:
[testng] [2024-11-29 00:31:21,542] [pool-1-thread-4] Initializing /data/imagej/scala-media.zip:
[testng] [2024-11-29 00:31:23,784] [pool-1-thread-7] Initializing /data/imagej/confocal-series.zip:
[testng] [2024-11-29 00:31:37,076] [pool-1-thread-11] Initializing /data/imagej/3D_Chromosome.zip:
[testng] [2024-11-29 00:31:43,875] [pool-1-thread-6] Initializing /data/imagej/flybrain.zip:
[testng] [2024-11-29 00:31:58,769] [pool-1-thread-4] Initializing /data/imagej/m51.zip:
[testng] [2024-11-29 00:32:03,838] [pool-1-thread-8] Initializing /data/samples/bat-cochlea-volume.zip:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1166, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 minutes 51 seconds
Finished: SUCCESS