Started by upstream project "BIOFORMATS-test-repo" build number 272 originally caused by: Started by upstream project "Trigger" build number 294 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins10418442423842466638.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42880_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:42:04,644 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:42:04,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:42:04,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:42:04,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:42:04,648 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:42:04,648 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:42:04,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:42:04,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:42:04,649 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:42:04,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:42:04,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:42:04,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:42:04,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:42:04,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:42:04,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:42:04,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:42:04,939 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:42:04,939 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:42:04,939 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:42:04,940 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:42:04,940 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:42:04,941 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:42:04,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 292 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-29 01:42:04,951] [main] java.version = 1.8.0_342 [testng] 01:42:04,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:42:04,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:05,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_01-42-04.log] [testng] 01:42:05,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-29 01:42:05,007] [main] testng.directory = /data [testng] [2024-11-29 01:42:05,007] [main] testng.configDirectory = /config [testng] [2024-11-29 01:42:05,020] [main] testng.multiplier = 1.0 [testng] [2024-11-29 01:42:05,021] [main] testng.in-memory = false [testng] [2024-11-29 01:42:05,021] [main] testng.allow-missing = false [testng] [2024-11-29 01:42:05,021] [main] user.language = en [testng] [2024-11-29 01:42:05,021] [main] user.country = ${user.country} [testng] [2024-11-29 01:42:05,021] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-29 01:55:07,900] [main] ---------------------------------------- [testng] [2024-11-29 01:55:07,900] [main] Total files: 7329 [testng] [2024-11-29 01:55:07,900] [main] Scan time: 782.878 s (106 ms/file) [testng] [2024-11-29 01:55:07,900] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-29 02:05:52,180] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 02:05:52,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:05:52,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:52,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_02-05-52.log] [testng] 02:05:52,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fbc0c93 - End of configuration. [testng] [2024-11-29 02:05:53,293] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] 02:05:53,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:05:53,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:53,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_02-05-53.log] [testng] 02:05:53,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7621c8f0 - End of configuration. [testng] [2024-11-29 02:05:54,398] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] 02:05:54,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:05:54,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:54,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_02-05-54.log] [testng] 02:05:54,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@515d6c0b - End of configuration. [testng] [2024-11-29 02:05:54,551] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] 02:05:54,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:05:54,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:54,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_02-05-54.log] [testng] 02:05:54,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f5f97f1 - End of configuration. [testng] [2024-11-29 02:05:55,544] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 02:05:55,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:05:55,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:55,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_02-05-55.log] [testng] 02:05:55,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49372176 - End of configuration. [testng] [2024-11-29 02:05:56,567] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 02:05:56,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:05:56,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:56,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_02-05-56.log] [testng] 02:05:56,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ca0d512 - End of configuration. [testng] [2024-11-29 02:05:57,731] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 02:05:57,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:05:57,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:57,732 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_02-05-57.log] [testng] 02:05:57,732 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37d23cbd - End of configuration. [testng] [2024-11-29 02:05:59,013] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 02:05:59,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:05:59,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:59,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_02-05-59.log] [testng] 02:05:59,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c7b0200 - End of configuration. [testng] [2024-11-29 02:06:00,091] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] 02:06:00,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:06:00,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:00,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_02-06-00.log] [testng] 02:06:00,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bb39d6e - End of configuration. [testng] [2024-11-29 02:06:01,188] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 02:06:01,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:06:01,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:01,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_02-06-01.log] [testng] 02:06:01,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9fae0a5 - End of configuration. [testng] [2024-11-29 02:06:02,169] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] 02:06:02,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:06:02,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:02,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_02-06-02.log] [testng] 02:06:02,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@497d8bff - End of configuration. [testng] [2024-11-29 02:06:08,306] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] 02:06:08,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:06:08,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:08,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_02-06-08.log] [testng] 02:06:08,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41916d43 - End of configuration. [testng] [2024-11-29 02:06:13,871] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-11-29 02:06:30,375] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-11-29 02:06:31,831] [pool-1-thread-10] Initializing /data/josh/2101to600astk.stk: [testng] [2024-11-29 02:07:02,939] [pool-1-thread-1] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-11-29 02:07:04,031] [pool-1-thread-6] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-11-29 02:07:05,266] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-11-29 02:07:06,491] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 02:07:07,708] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-11-29 02:07:09,087] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-11-29 02:07:14,226] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-11-29 02:07:18,155] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-11-29 02:07:20,705] [pool-1-thread-7] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-11-29 02:07:23,088] [pool-1-thread-1] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-11-29 02:07:24,493] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-11-29 02:07:25,946] [pool-1-thread-6] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-11-29 02:07:27,033] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-11-29 02:07:35,157] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-11-29 02:07:37,297] [pool-1-thread-6] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-11-29 02:07:42,660] [pool-1-thread-2] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-11-29 02:07:44,233] [pool-1-thread-8] Initializing /data/steve/Experiment2.stk: [testng] [2024-11-29 02:07:47,007] [pool-1-thread-12] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-11-29 02:07:51,356] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-11-29 02:07:53,315] [pool-1-thread-3] Used files list does not include base file [testng] [2024-11-29 02:07:54,989] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-11-29 02:07:56,410] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-11-29 02:07:57,754] [pool-1-thread-6] Used files list does not include base file [testng] [2024-11-29 02:07:57,755] [pool-1-thread-8] Initializing /data/cumol-test-series/23.001: [testng] [2024-11-29 02:07:59,456] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-11-29 02:08:05,438] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-29 02:08:06,906] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-11-29 02:08:08,842] [pool-1-thread-9] Used files list does not include base file [testng] [2024-11-29 02:08:10,331] [pool-1-thread-1] Initializing /data/thomas/test.tif: [testng] [2024-11-29 02:08:12,784] [pool-1-thread-5] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-11-29 02:08:14,118] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-11-29 02:08:16,262] [pool-1-thread-12] Used files list does not include base file [testng] [2024-11-29 02:08:19,806] [pool-1-thread-6] Initializing /data/qa-16915/m-04.tif: [testng] [2024-11-29 02:08:23,135] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-11-29 02:08:24,569] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-29 02:08:27,409] [pool-1-thread-5] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-11-29 02:08:35,776] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-11-29 02:08:37,313] [pool-1-thread-7] Used files list does not include base file [testng] [2024-11-29 02:08:38,410] [pool-1-thread-6] Initializing /data/josh/2101to400astk.stk: [testng] [2024-11-29 02:08:51,647] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-11-29 02:08:53,634] [pool-1-thread-11] Used files list does not include base file [testng] [2024-11-29 02:08:58,192] [pool-1-thread-1] Initializing /data/ascb/mt aim.tif: [testng] [2024-11-29 02:09:01,107] [pool-1-thread-8] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-11-29 02:09:05,809] [pool-1-thread-2] Initializing /data/qa-16915/m-02.tif: [testng] [2024-11-29 02:09:07,668] [pool-1-thread-3] Initializing /data/samples/zserSixteen.stk: [testng] [2024-11-29 02:09:09,156] [pool-1-thread-7] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-11-29 02:09:11,554] [pool-1-thread-1] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-11-29 02:09:20,469] [pool-1-thread-8] Initializing /data/josh/2101to600f.stk: [testng] [2024-11-29 02:09:39,901] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-11-29 02:09:44,851] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-11-29 02:09:47,208] [pool-1-thread-9] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-11-29 02:09:48,792] [pool-1-thread-12] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-11-29 02:09:55,783] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-29 02:09:59,914] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-11-29 02:10:01,426] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-11-29 02:10:11,044] [pool-1-thread-2] Initializing /data/dave/Z Series.stk: [testng] [2024-11-29 02:10:15,050] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-11-29 02:10:16,517] [pool-1-thread-3] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-11-29 02:10:23,164] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-11-29 02:10:25,011] [pool-1-thread-12] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-11-29 02:10:26,608] [pool-1-thread-2] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-11-29 02:10:31,693] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-11-29 02:10:35,625] [pool-1-thread-4] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-11-29 02:10:39,547] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-11-29 02:10:45,033] [pool-1-thread-7] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-11-29 02:11:19,600] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-11-29 02:11:21,108] [pool-1-thread-3] Used files list does not include base file [testng] [2024-11-29 02:11:21,972] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 02:11:23,314] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-11-29 02:11:24,688] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 02:11:26,071] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-11-29 02:11:28,077] [pool-1-thread-9] Used files list does not include base file [testng] [2024-11-29 02:11:31,818] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-11-29 02:11:39,331] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-11-29 02:11:42,359] [pool-1-thread-3] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-11-29 02:11:43,852] [pool-1-thread-11] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-11-29 02:11:45,306] [pool-1-thread-10] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-11-29 02:11:51,767] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-11-29 02:12:05,772] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 02:12:08,017] [pool-1-thread-6] Initializing /data/josh/2101to600e.stk: [testng] [2024-11-29 02:12:14,393] [pool-1-thread-4] Initializing /data/samples/zseries.stk: [testng] [2024-11-29 02:12:15,569] [pool-1-thread-5] Initializing /data/grant/X.STK: [testng] [2024-11-29 02:12:17,058] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-11-29 02:12:23,909] [pool-1-thread-4] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-11-29 02:12:27,730] [pool-1-thread-3] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-11-29 02:12:32,854] [pool-1-thread-11] Initializing /data/samples/10xcalib.tif: [testng] [2024-11-29 02:12:34,207] [pool-1-thread-5] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-11-29 02:12:40,837] [pool-1-thread-8] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-11-29 02:12:43,390] [pool-1-thread-11] Initializing /data/samples/diatoms3d.stk: [testng] [2024-11-29 02:12:46,126] [pool-1-thread-5] Initializing /data/david/tl4.tif: [testng] [2024-11-29 02:12:51,168] [pool-1-thread-10] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-11-29 02:12:52,669] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-11-29 02:12:53,859] [pool-1-thread-8] Initializing /data/qa-16915/m-01.tif: [testng] [2024-11-29 02:12:55,317] [pool-1-thread-9] Initializing /data/alex/Selected FITC.stk: [testng] [2024-11-29 02:12:56,437] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-11-29 02:13:01,897] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-11-29 02:13:06,717] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-11-29 02:13:07,953] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-29 02:13:09,307] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-11-29 02:13:13,717] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-11-29 02:13:15,581] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-11-29 02:13:16,691] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 02:13:17,977] [pool-1-thread-8] Initializing /data/ascb/golgi marker.tif: [testng] [2024-11-29 02:13:19,957] [pool-1-thread-7] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-11-29 02:13:23,540] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-11-29 02:13:29,212] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-11-29 02:13:30,980] [pool-1-thread-8] Used files list does not include base file [testng] [2024-11-29 02:13:30,981] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-11-29 02:13:35,442] [pool-1-thread-4] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-11-29 02:13:36,706] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-11-29 02:13:41,313] [pool-1-thread-6] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-11-29 02:13:42,990] [pool-1-thread-5] Initializing /data/aaron/metamorph.stk: [testng] [2024-11-29 02:13:44,259] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-11-29 02:13:45,472] [pool-1-thread-7] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-11-29 02:13:50,323] [pool-1-thread-9] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-11-29 02:13:52,862] [pool-1-thread-4] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-11-29 02:13:57,303] [pool-1-thread-10] Initializing 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Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-11-29 02:15:37,722] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 02:15:40,547] [pool-1-thread-8] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-11-29 02:15:51,814] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-29 02:16:04,555] [pool-1-thread-7] Initializing /data/josh/2101to600b.stk: [testng] [2024-11-29 02:16:15,956] [pool-1-thread-2] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-11-29 02:16:23,693] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-11-29 02:16:25,737] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-11-29 02:16:28,989] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-11-29 02:16:30,243] [pool-1-thread-4] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-11-29 02:16:36,242] [pool-1-thread-6] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-11-29 02:16:39,722] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-11-29 02:16:41,819] [pool-1-thread-3] Used files list does not include base file [testng] [2024-11-29 02:16:44,926] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-11-29 02:16:48,068] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-11-29 02:16:59,138] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-11-29 02:17:25,049] [pool-1-thread-4] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-11-29 02:17:29,521] [pool-1-thread-6] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-11-29 02:17:34,190] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-11-29 02:17:35,600] [pool-1-thread-7] Used files list does not include base file [testng] [2024-11-29 02:17:35,787] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-11-29 02:17:37,660] [pool-1-thread-8] Used files list does not include base file [testng] [2024-11-29 02:17:45,044] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-11-29 02:17:47,010] [pool-1-thread-3] Used files list does not include base file [testng] [2024-11-29 02:17:53,251] [pool-1-thread-7] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-11-29 02:18:02,345] [pool-1-thread-7] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-11-29 02:18:03,781] [pool-1-thread-4] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-11-29 02:18:05,813] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-11-29 02:18:12,668] [pool-1-thread-4] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-11-29 02:18:25,427] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-11-29 02:18:26,629] [pool-1-thread-7] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-11-29 02:18:28,621] [pool-1-thread-5] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-11-29 02:18:35,231] [pool-1-thread-10] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-11-29 02:18:36,257] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-11-29 02:18:37,715] [pool-1-thread-7] Used files list does not include base file [testng] [2024-11-29 02:18:37,716] [pool-1-thread-8] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-11-29 02:18:38,758] [pool-1-thread-5] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-11-29 02:18:41,204] [pool-1-thread-4] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-11-29 02:18:55,232] [pool-1-thread-3] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-11-29 02:18:56,976] [pool-1-thread-10] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-11-29 02:18:57,745] [pool-1-thread-8] Initializing /data/jerome/deconv.STK: [testng] [2024-11-29 02:19:00,033] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-11-29 02:19:04,845] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-11-29 02:19:05,934] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-11-29 02:19:10,435] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-11-29 02:19:16,091] [pool-1-thread-8] Initializing /data/jae/RGB_s34.tif: [testng] [2024-11-29 02:19:20,215] [pool-1-thread-3] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-11-29 02:19:22,991] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-11-29 02:19:24,519] [pool-1-thread-10] Used files list does not include base file [testng] [2024-11-29 02:19:29,608] [pool-1-thread-8] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-11-29 02:19:42,013] [pool-1-thread-7] Initializing /data/steve/Experiment2.tif: [testng] [2024-11-29 02:19:45,278] [pool-1-thread-8] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-11-29 02:19:50,848] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 02:19:59,144] [pool-1-thread-8] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-11-29 02:20:06,241] [pool-1-thread-8] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-11-29 02:20:12,136] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-11-29 02:20:26,812] [pool-1-thread-10] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-11-29 02:20:35,793] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 02:20:56,907] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 02:21:04,079] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-11-29 02:21:06,118] [pool-1-thread-10] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-11-29 02:21:13,222] [pool-1-thread-8] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-11-29 02:21:15,219] [pool-1-thread-10] Initializing /data/thomas/t_test2001.tif: [testng] [2024-11-29 02:21:16,797] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-11-29 02:21:24,130] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-11-29 02:21:25,376] [pool-1-thread-10] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-11-29 02:21:27,240] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-11-29 02:21:33,704] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-11-29 02:21:34,976] [pool-1-thread-8] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-11-29 02:21:36,831] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-11-29 02:21:38,349] [pool-1-thread-7] Used files list does not include base file [testng] 04:11:38,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:11:38,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:11:38,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_04-11-38.log] [testng] 04:11:38,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66d96549 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 149 minutes 39 seconds Finished: SUCCESS