![[Jenkins]](/jenkins/static/28c89a1b/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 272 originally caused by: Started by upstream project "Trigger" build number 294 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16133994617565366091.sh + '[' leica-tcs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42938_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:39:37,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:39:37,939 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:39:37,939 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:39:37,940 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:39:37,940 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:39:37,940 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:39:37,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:39:37,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:39:37,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:39:37,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:39:37,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:39:37,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:39:38,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:39:38,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:39:38,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:39:38,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:39:38,221 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:39:38,221 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:39:38,221 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:39:38,222 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:39:38,222 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:39:38,223 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:39:38,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-29 03:39:38,233] [main] java.version = 1.8.0_342 [testng] 03:39:38,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:39:38,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:38,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_03-39-38.log] [testng] 03:39:38,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-29 03:39:38,291] [main] testng.directory = /data [testng] [2024-11-29 03:39:38,292] [main] testng.configDirectory = /config [testng] [2024-11-29 03:39:38,305] [main] testng.multiplier = 1.0 [testng] [2024-11-29 03:39:38,305] [main] testng.in-memory = false [testng] [2024-11-29 03:39:38,305] [main] testng.allow-missing = false [testng] [2024-11-29 03:39:38,305] [main] user.language = en [testng] [2024-11-29 03:39:38,305] [main] user.country = ${user.country} [testng] [2024-11-29 03:39:38,305] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-29 03:40:07,318] [main] ---------------------------------------- [testng] [2024-11-29 03:40:07,318] [main] Total files: 944 [testng] [2024-11-29 03:40:07,318] [main] Scan time: 29.012 s (30 ms/file) [testng] [2024-11-29 03:40:07,318] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-29 03:41:36,792] [pool-1-thread-1] Initializing /data/stjude/AntoDay1dblGRP.tif: [testng] 03:41:36,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:41:36,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:36,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_03-41-36.log] [testng] 03:41:36,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23ffb81f - End of configuration. [testng] [2024-11-29 03:41:38,119] [pool-1-thread-12] Initializing /data/brian/Series002_z01.tif: [testng] 03:41:38,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:41:38,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:38,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_03-41-38.log] [testng] 03:41:38,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4192254a - End of configuration. [testng] [2024-11-29 03:41:40,002] [pool-1-thread-11] Initializing /data/martin/Series028_z00_ch00.tif: [testng] 03:41:40,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:41:40,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:40,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_03-41-40.log] [testng] 03:41:40,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7461f431 - End of configuration. [testng] [2024-11-29 03:41:41,724] [pool-1-thread-10] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: [testng] 03:41:41,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:41:41,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:41,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_03-41-41.log] [testng] 03:41:41,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e7d1174 - End of configuration. [testng] [2024-11-29 03:41:43,160] [pool-1-thread-9] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: [testng] 03:41:43,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:41:43,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:43,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_03-41-43.log] [testng] 03:41:43,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33963deb - End of configuration. [testng] [2024-11-29 03:41:44,299] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblmysglGRP.tif: [testng] 03:41:44,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:41:44,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:44,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_03-41-44.log] [testng] 03:41:44,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62b9cdda - End of configuration. [testng] [2024-11-29 03:41:45,497] [pool-1-thread-7] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: [testng] 03:41:45,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:41:45,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:45,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_03-41-45.log] [testng] 03:41:45,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@520038fc - End of configuration. [testng] [2024-11-29 03:41:46,631] [pool-1-thread-6] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: [testng] 03:41:46,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:41:46,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:46,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_03-41-46.log] [testng] 03:41:46,633 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34f0d812 - End of configuration. [testng] [2024-11-29 03:42:33,832] [pool-1-thread-5] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: [testng] 03:42:33,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:42:33,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:33,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_03-42-33.log] [testng] 03:42:33,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28f5e7bd - End of configuration. [testng] [2024-11-29 03:42:35,009] [pool-1-thread-4] Initializing /data/brian/Series002_z00_ch00.tif: [testng] 03:42:35,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:42:35,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:35,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_03-42-35.log] [testng] 03:42:35,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@531da48e - End of configuration. [testng] [2024-11-29 03:42:36,279] [pool-1-thread-3] Initializing /data/stjude/AntoDay4dblmyGRP.tif: [testng] 03:42:36,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:42:36,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:36,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_03-42-36.log] [testng] 03:42:36,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@89572d8 - End of configuration. [testng] [2024-11-29 03:42:37,460] [pool-1-thread-2] Initializing /data/stjude/AntoDayzerocy3GRP.tif: [testng] 03:42:37,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:42:37,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:37,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_03-42-37.log] [testng] 03:42:37,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7894ca85 - End of configuration. [testng] [2024-11-29 03:42:47,113] [pool-1-thread-9] Initializing /data/primate/Leica_Image.tif: [testng] [2024-11-29 03:42:51,197] [pool-1-thread-12] Initializing /data/stjude/AntoDayzerocy3OVP.tif: [testng] [2024-11-29 03:42:52,911] [pool-1-thread-3] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: [testng] 04:52:00,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:52:00,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:52:00,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_04-52-00.log] [testng] 04:52:00,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@181d8899 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 72 minutes 27 seconds Finished: SUCCESS