Started by upstream project "BIOFORMATS-test-repo" build number 273
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins6504569792972119081.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42970_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 06:59:08,940 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 06:59:08,942 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 06:59:08,942 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:59:08,943 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:59:08,943 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 06:59:08,944 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 06:59:08,944 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 06:59:08,944 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:59:08,945 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:59:08,945 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 06:59:08,945 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 06:59:08,945 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 06:59:09,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 06:59:09,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 06:59:09,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 06:59:09,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 06:59:09,283 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 06:59:09,284 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 06:59:09,284 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 06:59:09,284 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 06:59:09,285 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 06:59:09,285 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 06:59:09,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 341 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-29 06:59:09,297] [main] java.version = 1.8.0_342
[testng] 06:59:09,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:59:09,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:09,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_06-59-09.log]
[testng] 06:59:09,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-29 06:59:09,357] [main] testng.directory = /data
[testng] [2024-11-29 06:59:09,357] [main] testng.configDirectory = /config
[testng] [2024-11-29 06:59:09,372] [main] testng.multiplier = 1.0
[testng] [2024-11-29 06:59:09,372] [main] testng.in-memory = false
[testng] [2024-11-29 06:59:09,372] [main] testng.allow-missing = false
[testng] [2024-11-29 06:59:09,372] [main] user.language = en
[testng] [2024-11-29 06:59:09,372] [main] user.country = ${user.country}
[testng] [2024-11-29 06:59:09,372] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-29 06:59:34,650] [main] ----------------------------------------
[testng] [2024-11-29 06:59:34,650] [main] Total files: 315
[testng] [2024-11-29 06:59:34,650] [main] Scan time: 25.278 s (80 ms/file)
[testng] [2024-11-29 06:59:34,650] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 192 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-29 07:13:20,622] [pool-1-thread-1] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] 07:13:20,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 07:13:20,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:13:20,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_07-13-20.log]
[testng] 07:13:20,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fc59643 - End of configuration.
[testng] [2024-11-29 07:14:19,726] [pool-1-thread-12] Initializing /data/qa-17270/stack1.oir:
[testng] 07:14:19,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 07:14:19,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:19,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_07-14-19.log]
[testng] 07:14:19,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15dbb0b3 - End of configuration.
[testng] [2024-11-29 07:14:21,641] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] 07:14:21,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 07:14:21,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:21,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_07-14-21.log]
[testng] 07:14:21,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fae9a28 - End of configuration.
[testng] [2024-11-29 07:14:21,890] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] 07:14:21,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 07:14:21,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:21,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_07-14-21.log]
[testng] 07:14:21,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e492060 - End of configuration.
[testng] [2024-11-29 07:14:22,386] [pool-1-thread-9] Initializing /data/qa-17919/f10187.oir:
[testng] 07:14:22,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 07:14:22,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:22,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_07-14-22.log]
[testng] 07:14:22,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2434824 - End of configuration.
[testng] [2024-11-29 07:14:42,431] [pool-1-thread-8] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] 07:14:42,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 07:14:42,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:42,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_07-14-42.log]
[testng] 07:14:42,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14d09cb5 - End of configuration.
[testng] [2024-11-29 07:14:43,061] [pool-1-thread-7] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] 07:14:43,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 07:14:43,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:43,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_07-14-43.log]
[testng] 07:14:43,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5feae5c4 - End of configuration.
[testng] [2024-11-29 07:14:43,513] [pool-1-thread-6] Initializing /data/qa-17270/image1.oir:
[testng] 07:14:43,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 07:14:43,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:43,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_07-14-43.log]
[testng] 07:14:43,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47a96444 - End of configuration.
[testng] [2024-11-29 07:14:43,791] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] 07:14:43,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 07:14:43,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:43,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_07-14-43.log]
[testng] 07:14:43,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d8b76c8 - End of configuration.
[testng] [2024-11-29 07:14:44,476] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] 07:14:44,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 07:14:44,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:44,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_07-14-44.log]
[testng] 07:14:44,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a1101d0 - End of configuration.
[testng] [2024-11-29 07:14:45,169] [pool-1-thread-3] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] 07:14:45,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 07:14:45,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:45,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_07-14-45.log]
[testng] 07:14:45,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@612410f - End of configuration.
[testng] [2024-11-29 07:14:45,620] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] 07:14:45,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 07:14:45,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:45,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_07-14-45.log]
[testng] 07:14:45,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25aa9d6a - End of configuration.
[testng] [2024-11-29 07:14:52,845] [pool-1-thread-11] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-11-29 07:14:53,450] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-11-29 07:14:54,108] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-11-29 07:14:55,105] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-11-29 07:14:56,753] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-11-29 07:14:57,427] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-11-29 07:14:58,287] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-11-29 07:15:04,271] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-11-29 07:15:05,825] [pool-1-thread-11] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-11-29 07:15:06,834] [pool-1-thread-5] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-11-29 07:15:08,272] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-11-29 07:15:09,969] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-11-29 07:15:10,843] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-11-29 07:15:11,564] [pool-1-thread-8] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-11-29 07:15:14,247] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-11-29 07:15:20,348] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-11-29 07:15:21,621] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-11-29 07:15:23,174] [pool-1-thread-4] Initializing /data/olympus/XYZt.oir:
[testng] [2024-11-29 07:15:32,837] [pool-1-thread-5] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-11-29 07:15:34,197] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-11-29 07:15:35,099] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-11-29 07:15:35,714] [pool-1-thread-3] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-11-29 07:15:41,236] [pool-1-thread-11] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-11-29 07:15:45,082] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-11-29 07:17:02,952] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-11-29 07:17:03,609] [pool-1-thread-5] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-11-29 07:17:04,613] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-11-29 07:17:06,995] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-11-29 07:17:12,477] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-11-29 07:17:14,382] [pool-1-thread-8] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-11-29 07:17:18,977] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-11-29 07:17:21,648] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-11-29 07:17:25,350] [pool-1-thread-10] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-11-29 07:17:27,345] [pool-1-thread-3] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-11-29 07:17:29,006] [pool-1-thread-12] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-11-29 07:17:31,367] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-11-29 07:17:34,744] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-11-29 07:17:37,209] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-11-29 07:17:38,553] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-11-29 07:17:39,643] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-11-29 07:17:42,153] [pool-1-thread-6] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-11-29 07:17:44,355] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-11-29 07:17:45,493] [pool-1-thread-10] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-11-29 07:17:47,475] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-11-29 07:17:49,197] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-11-29 07:17:53,368] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-11-29 07:17:54,171] [pool-1-thread-10] Initializing /data/qa-17335/1.oir:
[testng] [2024-11-29 07:17:56,250] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-11-29 07:17:58,499] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-11-29 07:18:04,170] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-11-29 07:18:06,208] [pool-1-thread-7] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-11-29 07:18:06,538] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-11-29 07:18:08,264] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-11-29 07:18:11,162] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-11-29 07:18:12,996] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-11-29 07:18:16,161] [pool-1-thread-12] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-11-29 07:18:16,541] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-11-29 07:18:18,409] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-11-29 07:18:23,917] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-11-29 07:18:28,507] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-11-29 07:18:36,894] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-11-29 07:18:42,771] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-11-29 07:18:47,704] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-11-29 07:18:49,810] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2024-11-29 07:18:50,517] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-11-29 07:18:56,923] [pool-1-thread-4] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-11-29 07:18:57,870] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-11-29 07:18:58,752] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-11-29 07:19:00,712] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-11-29 07:19:03,016] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-11-29 07:19:05,248] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-11-29 07:19:31,109] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-11-29 07:19:32,522] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-11-29 07:19:34,637] [pool-1-thread-12] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-11-29 07:19:35,722] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-11-29 07:19:37,800] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-11-29 07:19:43,955] [pool-1-thread-4] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-11-29 07:19:47,206] [pool-1-thread-12] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-11-29 07:19:49,364] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-11-29 07:19:50,008] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-11-29 07:19:50,953] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-11-29 07:19:58,674] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-11-29 07:20:04,922] [pool-1-thread-4] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-11-29 07:20:08,431] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-11-29 07:20:14,429] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-11-29 07:20:15,513] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-11-29 07:20:16,376] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-11-29 07:20:20,400] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-11-29 07:20:23,047] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-11-29 07:20:26,862] [pool-1-thread-3] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-11-29 07:20:28,774] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-11-29 07:20:37,596] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-11-29 07:20:39,225] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-11-29 07:20:40,881] [pool-1-thread-4] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-11-29 07:20:46,451] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-11-29 07:20:50,408] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-11-29 07:20:55,546] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-11-29 07:20:56,382] [pool-1-thread-4] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-11-29 07:21:03,847] [pool-1-thread-3] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-11-29 07:21:04,657] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-11-29 07:21:16,013] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-11-29 07:21:22,470] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-11-29 07:21:27,121] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-11-29 07:21:36,645] [pool-1-thread-7] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-11-29 07:22:52,270] [pool-1-thread-12] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-11-29 07:23:02,610] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-11-29 07:23:06,543] [pool-1-thread-12] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-11-29 07:23:25,003] [pool-1-thread-6] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-11-29 07:23:56,425] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-11-29 07:24:00,149] [pool-1-thread-3] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-11-29 07:24:06,888] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-11-29 07:24:14,206] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-11-29 07:24:14,958] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-11-29 07:24:20,295] [pool-1-thread-3] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-11-29 07:24:21,658] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-11-29 07:24:25,106] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-11-29 07:24:29,858] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-11-29 07:24:33,159] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-11-29 07:24:38,094] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-11-29 07:24:40,030] [pool-1-thread-11] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-11-29 07:24:40,834] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-11-29 07:24:45,276] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-11-29 07:24:46,347] [pool-1-thread-12] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-11-29 07:24:48,171] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-11-29 07:24:52,645] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-11-29 07:25:01,966] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-11-29 07:25:15,115] [pool-1-thread-3] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-11-29 07:25:17,632] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-11-29 07:25:23,531] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-11-29 07:25:27,906] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-11-29 07:25:31,066] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-11-29 07:25:39,021] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-11-29 07:25:44,834] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-11-29 07:25:50,788] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-11-29 07:25:51,934] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-11-29 07:25:57,944] [pool-1-thread-3] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-11-29 07:26:03,471] [pool-1-thread-4] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-11-29 07:26:05,042] [pool-1-thread-11] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-11-29 07:26:09,857] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-11-29 07:26:13,548] [pool-1-thread-4] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-11-29 07:26:14,274] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-11-29 07:26:15,392] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-11-29 07:26:22,355] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-11-29 07:26:27,604] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-11-29 07:26:28,498] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-11-29 07:26:35,992] [pool-1-thread-12] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-11-29 07:26:37,810] [pool-1-thread-4] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-11-29 07:26:39,592] [pool-1-thread-8] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-11-29 07:26:50,611] [pool-1-thread-12] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-11-29 07:26:54,546] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-11-29 07:26:56,436] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-11-29 07:27:01,189] [pool-1-thread-11] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-11-29 07:27:03,437] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-11-29 07:27:04,749] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-11-29 07:27:09,277] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-11-29 07:27:10,051] [pool-1-thread-3] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-11-29 07:27:13,987] [pool-1-thread-11] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-11-29 07:27:26,856] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-11-29 07:27:28,953] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-11-29 07:27:30,217] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-11-29 07:27:32,964] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-11-29 07:27:35,587] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-11-29 07:27:40,127] [pool-1-thread-5] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-11-29 07:27:43,776] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-11-29 07:27:47,582] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-11-29 07:28:27,971] [pool-1-thread-5] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-11-29 07:28:38,987] [pool-1-thread-4] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-11-29 07:28:47,159] [pool-1-thread-4] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-11-29 07:29:28,958] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-11-29 07:29:31,148] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-11-29 07:29:48,609] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-11-29 07:29:54,471] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-11-29 07:29:55,426] [pool-1-thread-3] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-11-29 07:29:55,459] [pool-1-thread-8] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-11-29 07:29:59,421] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-11-29 07:30:07,198] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-11-29 07:30:28,965] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-11-29 07:30:36,860] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-11-29 07:30:37,586] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-11-29 07:30:43,878] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10176, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 74 minutes 6 seconds
Finished: SUCCESS