Started by upstream project "BIOFORMATS-test-repo" build number 273
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins8373537838244028771.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42974_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 06:59:12,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 06:59:12,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 06:59:12,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:59:12,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:59:12,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 06:59:12,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 06:59:12,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 06:59:12,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:59:12,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:59:12,968 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 06:59:12,968 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 06:59:12,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 06:59:13,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 06:59:13,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 06:59:13,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 06:59:13,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 06:59:13,253 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 06:59:13,253 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 06:59:13,253 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 06:59:13,253 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 06:59:13,253 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 06:59:13,254 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 06:59:13,254 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-29 06:59:13,265] [main] java.version = 1.8.0_342
[testng] 06:59:13,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:59:13,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:13,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_06-59-13.log]
[testng] 06:59:13,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-29 06:59:13,321] [main] testng.directory = /data
[testng] [2024-11-29 06:59:13,321] [main] testng.configDirectory = /config
[testng] [2024-11-29 06:59:13,335] [main] testng.multiplier = 1.0
[testng] [2024-11-29 06:59:13,335] [main] testng.in-memory = false
[testng] [2024-11-29 06:59:13,335] [main] testng.allow-missing = false
[testng] [2024-11-29 06:59:13,335] [main] user.language = en
[testng] [2024-11-29 06:59:13,335] [main] user.country = ${user.country}
[testng] [2024-11-29 06:59:13,336] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-29 06:59:13,977] [main] ----------------------------------------
[testng] [2024-11-29 06:59:13,977] [main] Total files: 21
[testng] [2024-11-29 06:59:13,977] [main] Scan time: 0.641 s (30 ms/file)
[testng] [2024-11-29 06:59:13,977] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-29 06:59:19,258] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim:
[testng] 06:59:19,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:59:19,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:19,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_06-59-19.log]
[testng] 06:59:19,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40dad5a7 - End of configuration.
[testng] [2024-11-29 06:59:19,465] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim:
[testng] 06:59:19,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:59:19,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:19,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_06-59-19.log]
[testng] 06:59:19,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5de70554 - End of configuration.
[testng] [2024-11-29 06:59:19,846] [pool-1-thread-12] Initializing /data/venu/Kontrolle0016.lim:
[testng] 06:59:19,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:59:19,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:19,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_06-59-19.log]
[testng] 06:59:19,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a0e939b - End of configuration.
[testng] [2024-11-29 06:59:19,990] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim:
[testng] 06:59:19,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:59:19,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:19,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_06-59-19.log]
[testng] 06:59:19,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fd3d5e1 - End of configuration.
[testng] [2024-11-29 06:59:20,141] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim:
[testng] 06:59:20,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:59:20,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:20,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_06-59-20.log]
[testng] 06:59:20,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@559f3520 - End of configuration.
[testng] [2024-11-29 06:59:20,306] [pool-1-thread-8] Initializing /data/venu/Kontrolle0018.lim:
[testng] 06:59:20,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:59:20,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:20,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_06-59-20.log]
[testng] 06:59:20,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33919ccc - End of configuration.
[testng] [2024-11-29 06:59:20,521] [pool-1-thread-7] Initializing /data/venu/Kontrolle0009.lim:
[testng] 06:59:20,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:59:20,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:20,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_06-59-20.log]
[testng] 06:59:20,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@178b8206 - End of configuration.
[testng] [2024-11-29 06:59:20,720] [pool-1-thread-6] Initializing /data/venu/Kontrolle0008.lim:
[testng] 06:59:20,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:59:20,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:20,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_06-59-20.log]
[testng] 06:59:20,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e0b4c81 - End of configuration.
[testng] [2024-11-29 06:59:20,871] [pool-1-thread-5] Initializing /data/venu/Kontrolle0005.lim:
[testng] 06:59:20,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:59:20,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:20,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_06-59-20.log]
[testng] 06:59:20,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@771160ed - End of configuration.
[testng] [2024-11-29 06:59:21,023] [pool-1-thread-4] Initializing /data/venu/Kontrolle0004.lim:
[testng] 06:59:21,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:59:21,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:21,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_06-59-21.log]
[testng] 06:59:21,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d8294b9 - End of configuration.
[testng] [2024-11-29 06:59:21,184] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim:
[testng] 06:59:21,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:59:21,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:21,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_06-59-21.log]
[testng] 06:59:21,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d81c61c - End of configuration.
[testng] [2024-11-29 06:59:21,333] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim:
[testng] 06:59:21,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:59:21,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:21,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_06-59-21.log]
[testng] 06:59:21,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b19f54c - End of configuration.
[testng] [2024-11-29 06:59:26,568] [pool-1-thread-3] Initializing /data/venu/Kontrolle0020.lim:
[testng] [2024-11-29 06:59:26,988] [pool-1-thread-6] Initializing /data/venu/Kontrolle0015.lim:
[testng] [2024-11-29 06:59:27,093] [pool-1-thread-11] Initializing /data/venu/Kontrolle0013.lim:
[testng] [2024-11-29 06:59:27,190] [pool-1-thread-2] Initializing /data/venu/Kontrolle0021.lim:
[testng] [2024-11-29 06:59:27,332] [pool-1-thread-9] Initializing /data/venu/Kontrolle0017.lim:
[testng] [2024-11-29 06:59:27,531] [pool-1-thread-5] Initializing /data/venu/Kontrolle0002.lim:
[testng] [2024-11-29 06:59:27,774] [pool-1-thread-4] Initializing /data/venu/Kontrolle0011.lim:
[testng] [2024-11-29 06:59:28,013] [pool-1-thread-8] Initializing /data/venu/Kontrolle0012.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 22 seconds
Finished: SUCCESS