Started by upstream project "BIOFORMATS-test-repo" build number 273
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins15710267127619885000.sh
+ '[' bmp = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42984_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 07:05:01,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 07:05:01,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 07:05:01,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:05:01,436 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:05:01,436 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 07:05:01,436 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 07:05:01,436 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 07:05:01,436 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:05:01,437 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:05:01,437 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 07:05:01,437 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 07:05:01,437 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 07:05:01,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 07:05:01,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 07:05:01,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 07:05:01,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 07:05:01,721 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 07:05:01,721 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 07:05:01,721 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 07:05:01,721 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 07:05:01,722 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 07:05:01,722 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 07:05:01,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-29 07:05:01,733] [main] java.version = 1.8.0_342
[testng] 07:05:01,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:05:01,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:01,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_07-05-01.log]
[testng] 07:05:01,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-29 07:05:01,789] [main] testng.directory = /data
[testng] [2024-11-29 07:05:01,790] [main] testng.configDirectory = /config
[testng] [2024-11-29 07:05:01,802] [main] testng.multiplier = 1.0
[testng] [2024-11-29 07:05:01,803] [main] testng.in-memory = false
[testng] [2024-11-29 07:05:01,803] [main] testng.allow-missing = false
[testng] [2024-11-29 07:05:01,803] [main] user.language = en
[testng] [2024-11-29 07:05:01,803] [main] user.country = ${user.country}
[testng] [2024-11-29 07:05:01,803] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-29 07:05:02,860] [main] ----------------------------------------
[testng] [2024-11-29 07:05:02,860] [main] Total files: 31
[testng] [2024-11-29 07:05:02,861] [main] Scan time: 1.057 s (34 ms/file)
[testng] [2024-11-29 07:05:02,861] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 31 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-29 07:05:08,856] [pool-1-thread-1] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp:
[testng] 07:05:08,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 07:05:08,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:08,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_07-05-08.log]
[testng] 07:05:08,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68231e58 - End of configuration.
[testng] [2024-11-29 07:05:08,968] [pool-1-thread-12] Initializing /data/brian/images/raw_a_rg.tiff:
[testng] 07:05:08,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 07:05:08,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:08,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_07-05-08.log]
[testng] 07:05:08,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e92c10d - End of configuration.
[testng] [2024-11-29 07:05:10,126] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Eight.bmp:
[testng] 07:05:10,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 07:05:10,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:10,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_07-05-10.log]
[testng] 07:05:10,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72dec48c - End of configuration.
[testng] [2024-11-29 07:05:10,227] [pool-1-thread-10] Initializing /data/stephane/holo0908.bmp:
[testng] 07:05:10,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 07:05:10,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:10,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_07-05-10.log]
[testng] 07:05:10,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a4ccf8 - End of configuration.
[testng] [2024-11-29 07:05:10,332] [pool-1-thread-9] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp:
[testng] 07:05:10,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 07:05:10,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:10,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_07-05-10.log]
[testng] 07:05:10,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b9a3d3c - End of configuration.
[testng] [2024-11-29 07:05:10,428] [pool-1-thread-8] Initializing /data/big-images/6kx6k-grey.bmp:
[testng] 07:05:10,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 07:05:10,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:10,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_07-05-10.log]
[testng] 07:05:10,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d53fff1 - End of configuration.
[testng] [2024-11-29 07:05:10,525] [pool-1-thread-7] Initializing /data/brian/images/kidney_TFl_1.bmp:
[testng] 07:05:10,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 07:05:10,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:10,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_07-05-10.log]
[testng] 07:05:10,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aad8511 - End of configuration.
[testng] [2024-11-29 07:05:10,631] [pool-1-thread-6] Initializing /data/bk/ch_00.bmp:
[testng] 07:05:10,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 07:05:10,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:10,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_07-05-10.log]
[testng] 07:05:10,633 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6015eb94 - End of configuration.
[testng] [2024-11-29 07:05:10,738] [pool-1-thread-5] Initializing /data/curtis/image2.bmp:
[testng] 07:05:10,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 07:05:10,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:10,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_07-05-10.log]
[testng] 07:05:10,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37f3aef6 - End of configuration.
[testng] [2024-11-29 07:05:10,853] [pool-1-thread-4] Initializing /data/big-images/8kx8k-grey.bmp:
[testng] 07:05:10,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 07:05:10,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:10,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_07-05-10.log]
[testng] 07:05:10,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71f80340 - End of configuration.
[testng] [2024-11-29 07:05:11,070] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Nine.bmp:
[testng] 07:05:11,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 07:05:11,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:11,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_07-05-11.log]
[testng] 07:05:11,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3572de15 - End of configuration.
[testng] [2024-11-29 07:05:11,397] [pool-1-thread-2] Initializing /data/curtis/image4.bmp:
[testng] 07:05:11,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 07:05:11,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:11,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_07-05-11.log]
[testng] 07:05:11,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4240aa59 - End of configuration.
[testng] [2024-11-29 07:05:17,339] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Two.bmp:
[testng] [2024-11-29 07:05:17,433] [pool-1-thread-5] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp:
[testng] [2024-11-29 07:05:17,525] [pool-1-thread-2] Initializing /data/curtis/image5.bmp:
[testng] [2024-11-29 07:05:17,623] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_One.bmp:
[testng] [2024-11-29 07:05:17,752] [pool-1-thread-3] Initializing /data/curtis/image1.bmp:
[testng] [2024-11-29 07:05:17,848] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Seven.bmp:
[testng] [2024-11-29 07:05:17,945] [pool-1-thread-10] Initializing /data/big-images/6kx6k.bmp:
[testng] [2024-11-29 07:05:18,042] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Six.bmp:
[testng] [2024-11-29 07:05:18,204] [pool-1-thread-1] Initializing /data/brian/images/raw_a_rg.bmp:
[testng] [2024-11-29 07:05:20,678] [pool-1-thread-3] Initializing /data/brian/images/23srp5dksub.bmp:
[testng] [2024-11-29 07:05:20,822] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Three.bmp:
[testng] [2024-11-29 07:05:20,950] [pool-1-thread-9] Initializing /data/curtis/image3.bmp:
[testng] [2024-11-29 07:05:21,063] [pool-1-thread-6] Initializing /data/ticket-12971/foo.bmp:
[testng] [2024-11-29 07:05:21,170] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Five.bmp:
[testng] [2024-11-29 07:05:21,273] [pool-1-thread-11] Initializing /data/brian/images/raw_a.bmp:
[testng] [2024-11-29 07:05:21,404] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Four.bmp:
[testng] [2024-11-29 07:05:22,099] [pool-1-thread-5] Initializing /data/big-images/8kx8k.bmp:
[testng] [2024-11-29 07:05:22,588] [pool-1-thread-8] Initializing /data/frank/cell_mask_error.bmp:
[testng] [2024-11-29 07:05:23,404] [pool-1-thread-9] Initializing /data/brian/images/DMSOHigh_001.bmp:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1643, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 41 seconds
Finished: SUCCESS