Started by upstream project "BIOFORMATS-test-repo" build number 273
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins4428090276429077603.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43002_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 07:22:40,900 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 07:22:40,901 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 07:22:40,901 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:22:40,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:22:40,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 07:22:40,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 07:22:40,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 07:22:40,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:22:40,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:22:40,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 07:22:40,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 07:22:40,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 07:22:41,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 07:22:41,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 07:22:41,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 07:22:41,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 07:22:41,171 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 07:22:41,172 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 07:22:41,172 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 07:22:41,172 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 07:22:41,172 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 07:22:41,173 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 07:22:41,173 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 269 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-29 07:22:41,184] [main] java.version = 1.8.0_342
[testng] 07:22:41,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:22:41,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:22:41,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_07-22-41.log]
[testng] 07:22:41,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-29 07:22:41,239] [main] testng.directory = /data
[testng] [2024-11-29 07:22:41,239] [main] testng.configDirectory = /config
[testng] [2024-11-29 07:22:41,251] [main] testng.multiplier = 1.0
[testng] [2024-11-29 07:22:41,251] [main] testng.in-memory = false
[testng] [2024-11-29 07:22:41,252] [main] testng.allow-missing = false
[testng] [2024-11-29 07:22:41,252] [main] user.language = en
[testng] [2024-11-29 07:22:41,252] [main] user.country = ${user.country}
[testng] [2024-11-29 07:22:41,252] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-29 07:22:43,677] [main] ----------------------------------------
[testng] [2024-11-29 07:22:43,678] [main] Total files: 14
[testng] [2024-11-29 07:22:43,678] [main] Scan time: 2.425 s (173 ms/file)
[testng] [2024-11-29 07:22:43,678] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-29 07:23:15,075] [pool-1-thread-1] Initializing /data/samples/BigTIFF.tif:
[testng] 07:23:15,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 07:23:15,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:23:15,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_07-23-15.log]
[testng] 07:23:15,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@555ca47a - End of configuration.
[testng] [2024-11-29 07:23:15,864] [pool-1-thread-12] Initializing /data/samples/BigTIFFLong.tif:
[testng] 07:23:15,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 07:23:15,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:23:15,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_07-23-15.log]
[testng] 07:23:15,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14fbd67d - End of configuration.
[testng] [2024-11-29 07:23:17,044] [pool-1-thread-11] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 07:23:17,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 07:23:17,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:23:17,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_07-23-17.log]
[testng] 07:23:17,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b513f3d - End of configuration.
[testng] [2024-11-29 07:23:20,184] [pool-1-thread-10] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 07:23:20,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 07:23:20,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:23:20,186 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_07-23-20.log]
[testng] 07:23:20,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29076054 - End of configuration.
[testng] [2024-11-29 07:23:22,124] [pool-1-thread-9] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 07:23:22,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 07:23:22,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:23:22,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_07-23-22.log]
[testng] 07:23:22,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20fea285 - End of configuration.
[testng] [2024-11-29 07:23:24,715] [pool-1-thread-8] Initializing /data/carlsen/Olympics8.tif:
[testng] 07:23:24,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 07:23:24,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:23:24,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_07-23-24.log]
[testng] 07:23:24,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34a6dcd0 - End of configuration.
[testng] [2024-11-29 07:23:26,659] [pool-1-thread-7] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 07:23:26,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 07:23:26,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:23:26,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_07-23-26.log]
[testng] 07:23:26,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40216824 - End of configuration.
[testng] [2024-11-29 07:23:28,318] [pool-1-thread-6] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 07:23:28,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 07:23:28,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:23:28,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_07-23-28.log]
[testng] 07:23:28,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c42a3a3 - End of configuration.
[testng] [2024-11-29 07:23:29,661] [pool-1-thread-5] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 07:23:29,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 07:23:29,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:23:29,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_07-23-29.log]
[testng] 07:23:29,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@359d6790 - End of configuration.
[testng] [2024-11-29 07:23:30,946] [pool-1-thread-4] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 07:23:30,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 07:23:30,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:23:30,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_07-23-30.log]
[testng] 07:23:30,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57efd645 - End of configuration.
[testng] [2024-11-29 07:23:31,959] [pool-1-thread-3] Initializing /data/samples/Classic.tif:
[testng] 07:23:31,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 07:23:31,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:23:31,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_07-23-31.log]
[testng] 07:23:31,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@748aa6c8 - End of configuration.
[testng] [2024-11-29 07:23:33,262] [pool-1-thread-2] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng] 07:23:33,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 07:23:33,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:23:33,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_07-23-33.log]
[testng] 07:23:33,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ffb14e6 - End of configuration.
[testng] [2024-11-29 07:23:46,521] [pool-1-thread-4] Initializing /data/samples/BigTIFFLong8.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 24 seconds
Finished: SUCCESS