Started by upstream project "BIOFORMATS-test-repo" build number 273
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins15994609236026993897.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43026_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 08:17:53,196 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 08:17:53,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 08:17:53,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:17:53,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:17:53,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 08:17:53,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 08:17:53,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 08:17:53,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:17:53,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:17:53,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 08:17:53,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 08:17:53,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 08:17:53,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 08:17:53,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 08:17:53,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 08:17:53,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 08:17:53,478 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 08:17:53,478 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 08:17:53,478 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 08:17:53,479 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 08:17:53,479 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 08:17:53,480 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 08:17:53,480 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 280 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-29 08:17:53,490] [main] java.version = 1.8.0_342
[testng] 08:17:53,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:17:53,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:17:53,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_08-17-53.log]
[testng] 08:17:53,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-29 08:17:53,543] [main] testng.directory = /data
[testng] [2024-11-29 08:17:53,544] [main] testng.configDirectory = /config
[testng] [2024-11-29 08:17:53,556] [main] testng.multiplier = 1.0
[testng] [2024-11-29 08:17:53,557] [main] testng.in-memory = false
[testng] [2024-11-29 08:17:53,557] [main] testng.allow-missing = false
[testng] [2024-11-29 08:17:53,557] [main] user.language = en
[testng] [2024-11-29 08:17:53,557] [main] user.country = ${user.country}
[testng] [2024-11-29 08:17:53,557] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-29 08:18:23,622] [main] ----------------------------------------
[testng] [2024-11-29 08:18:23,622] [main] Total files: 25
[testng] [2024-11-29 08:18:23,622] [main] Scan time: 30.065 s (1202 ms/file)
[testng] [2024-11-29 08:18:23,623] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-29 08:18:53,369] [pool-1-thread-1] Initializing /data/imagic/1-1.dm2:
[testng] 08:18:53,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 08:18:53,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:53,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_08-18-53.log]
[testng] 08:18:53,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a49b8cd - End of configuration.
[testng] [2024-11-29 08:18:54,218] [pool-1-thread-12] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png:
[testng] 08:18:54,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 08:18:54,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:54,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_08-18-54.log]
[testng] 08:18:54,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@534b3b30 - End of configuration.
[testng] [2024-11-29 08:18:54,332] [pool-1-thread-11] Initializing /data/imagic/not read correctly/Abeta Moon.dm2:
[testng] 08:18:54,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 08:18:54,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:54,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_08-18-54.log]
[testng] 08:18:54,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@658cc666 - End of configuration.
[testng] [2024-11-29 08:18:54,869] [pool-1-thread-10] Initializing /data/imagic/TEM 10118.dm2:
[testng] 08:18:54,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 08:18:54,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:54,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_08-18-54.log]
[testng] 08:18:54,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@397a0286 - End of configuration.
[testng] [2024-11-29 08:18:55,354] [pool-1-thread-9] Initializing /data/pang/unproc-auto:
[testng] 08:18:55,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 08:18:55,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:55,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_08-18-55.log]
[testng] 08:18:55,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c7bac98 - End of configuration.
[testng] [2024-11-29 08:18:55,928] [pool-1-thread-8] Initializing /data/pang/grating025k.dm2:
[testng] 08:18:55,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 08:18:55,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:55,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_08-18-55.log]
[testng] 08:18:55,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cb997f7 - End of configuration.
[testng] [2024-11-29 08:18:56,391] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png:
[testng] 08:18:56,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 08:18:56,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:56,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_08-18-56.log]
[testng] 08:18:56,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aad8511 - End of configuration.
[testng] [2024-11-29 08:18:56,466] [pool-1-thread-6] Initializing /data/pang/DLMeD2E1_010500x03.dm2:
[testng] 08:18:56,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 08:18:56,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:56,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_08-18-56.log]
[testng] 08:18:56,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6015eb94 - End of configuration.
[testng] [2024-11-29 08:18:56,969] [pool-1-thread-5] Initializing /data/pang/10500x-o4:
[testng] 08:18:56,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 08:18:56,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:56,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_08-18-56.log]
[testng] 08:18:56,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37f3aef6 - End of configuration.
[testng] [2024-11-29 08:18:57,382] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png:
[testng] 08:18:57,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 08:18:57,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:57,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_08-18-57.log]
[testng] 08:18:57,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71f80340 - End of configuration.
[testng] [2024-11-29 08:18:57,440] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png:
[testng] 08:18:57,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 08:18:57,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:57,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_08-18-57.log]
[testng] 08:18:57,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3572de15 - End of configuration.
[testng] [2024-11-29 08:18:57,520] [pool-1-thread-2] Initializing /data/imagic/not read correctly/Zucchini_preview.png:
[testng] 08:18:57,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 08:18:57,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:57,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_08-18-57.log]
[testng] 08:18:57,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4240aa59 - End of configuration.
[testng] [2024-11-29 08:19:01,284] [pool-1-thread-4] Initializing /data/imagic/not read correctly/Zucchini.dm2:
[testng] [2024-11-29 08:19:01,643] [pool-1-thread-2] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png:
[testng] [2024-11-29 08:19:01,696] [pool-1-thread-12] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2:
[testng] [2024-11-29 08:19:01,976] [pool-1-thread-7] Initializing /data/imagic/13008.dm2:
[testng] [2024-11-29 08:19:02,271] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png:
[testng] [2024-11-29 08:19:02,539] [pool-1-thread-8] Initializing /data/pang/signed:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 18 seconds
Finished: SUCCESS