Started by upstream project "BIOFORMATS-test-repo" build number 273
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins1840312914420804133.sh
+ '[' cellomics = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43063_merge_ci -v /uod/idr/repos/curated/cellomics:/data -v /uod/idr-scratch/merge-ci/curated/cellomics:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 09:53:30,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 09:53:30,122 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 09:53:30,122 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 09:53:30,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 09:53:30,123 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 09:53:30,123 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 09:53:30,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 09:53:30,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 09:53:30,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 09:53:30,124 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 09:53:30,124 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 09:53:30,124 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 09:53:30,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 09:53:30,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 09:53:30,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 09:53:30,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 09:53:30,367 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 09:53:30,367 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 09:53:30,367 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 09:53:30,367 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 09:53:30,367 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 09:53:30,368 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 09:53:30,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 244 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-29 09:53:30,377] [main] java.version = 1.8.0_342
[testng] 09:53:30,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 09:53:30,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:53:30,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_09-53-30.log]
[testng] 09:53:30,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-29 09:53:30,426] [main] testng.directory = /data
[testng] [2024-11-29 09:53:30,426] [main] testng.configDirectory = /config
[testng] [2024-11-29 09:53:30,438] [main] testng.multiplier = 1.0
[testng] [2024-11-29 09:53:30,438] [main] testng.in-memory = false
[testng] [2024-11-29 09:53:30,438] [main] testng.allow-missing = false
[testng] [2024-11-29 09:53:30,438] [main] user.language = en
[testng] [2024-11-29 09:53:30,438] [main] user.country = ${user.country}
[testng] [2024-11-29 09:53:30,438] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-29 09:54:11,557] [main] ----------------------------------------
[testng] [2024-11-29 09:54:11,558] [main] Total files: 2539
[testng] [2024-11-29 09:54:11,558] [main] Scan time: 41.119 s (16 ms/file)
[testng] [2024-11-29 09:54:11,558] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-29 09:54:53,088] [pool-1-thread-1] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00o1.C01:
[testng] 09:54:53,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 09:54:53,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:54:53,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_09-54-53.log]
[testng] 09:54:53,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e21c269 - End of configuration.
[testng] [2024-11-29 09:54:53,756] [pool-1-thread-12] Initializing /data/lee/icd002235_090127090001_a01f00d1.c01:
[testng] 09:54:53,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 09:54:53,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:54:53,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_09-54-53.log]
[testng] 09:54:53,757 |-INFO in ch.qos.logback.core.sift.SiftProcessor@783cbef9 - End of configuration.
[testng] [2024-11-29 09:54:54,285] [pool-1-thread-11] Initializing /data/samples/different-field-count/plate_B03f00d0.C01:
[testng] 09:54:54,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 09:54:54,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:54:54,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_09-54-54.log]
[testng] 09:54:54,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@428904cc - End of configuration.
[testng] [2024-11-29 09:54:54,836] [pool-1-thread-10] Initializing /data/lee/AS_09125_050116030001_D03f00d0.DIB:
[testng] 09:54:54,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 09:54:54,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:54:54,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_09-54-54.log]
[testng] 09:54:54,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6291d994 - End of configuration.
[testng] [2024-11-29 09:54:55,353] [pool-1-thread-9] Initializing /data/harri/MFGTMP-PC_111018140003/MFGTMP-PC_111018140003_E04f00d0.C01:
[testng] 09:54:55,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 09:54:55,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:54:55,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_09-54-55.log]
[testng] 09:54:55,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d3cd84 - End of configuration.
[testng] [2024-11-29 09:54:56,014] [pool-1-thread-8] Initializing /data/qa-21720/AS_09125_050117190001_A14f00d0.DIB:
[testng] 09:54:56,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 09:54:56,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:54:56,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_09-54-56.log]
[testng] 09:54:56,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c704ea6 - End of configuration.
[testng] [2024-11-29 09:54:56,545] [pool-1-thread-7] Initializing /data/johannes/MFGTMP_081128200001_A02f239d1.C01:
[testng] 09:54:56,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 09:54:56,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:54:56,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_09-54-56.log]
[testng] 09:54:56,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@741695e9 - End of configuration.
[testng] [2024-11-29 09:54:57,116] [pool-1-thread-6] Initializing /data/johannes/MFGTMP_081222130005_E07f00d0.C01:
[testng] 09:54:57,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 09:54:57,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:54:57,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_09-54-57.log]
[testng] 09:54:57,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d2268eb - End of configuration.
[testng] [2024-11-29 09:54:57,662] [pool-1-thread-5] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01:
[testng] 09:54:57,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 09:54:57,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:54:57,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_09-54-57.log]
[testng] 09:54:57,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38a71dfc - End of configuration.
[testng] [2024-11-29 09:54:58,361] [pool-1-thread-4] Initializing /data/omar/FB03f00d1.C01:
[testng] 09:54:58,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 09:54:58,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:54:58,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_09-54-58.log]
[testng] 09:54:58,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d169d1 - End of configuration.
[testng] [2024-11-29 09:54:58,943] [pool-1-thread-3] Initializing /data/public/BBBC001/AS_09125_050118150001_A03f00d0.DIB:
[testng] 09:54:58,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 09:54:58,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:54:58,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_09-54-58.log]
[testng] 09:54:58,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cb7b4f3 - End of configuration.
[testng] [2024-11-29 09:54:59,507] [pool-1-thread-2] Initializing /data/omar/FB03f00o2.C01:
[testng] 09:54:59,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 09:54:59,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:54:59,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_09-54-59.log]
[testng] 09:54:59,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@548aa02e - End of configuration.
[testng] [2024-11-29 09:55:05,256] [pool-1-thread-10] Initializing /data/omar/FB03f00o1.C01:
[testng] [2024-11-29 09:55:09,251] [pool-1-thread-6] Initializing /data/samples/sparse-plate/plate_E03f00d0.C01:
[testng] [2024-11-29 09:55:09,885] [pool-1-thread-12] Initializing /data/omar/FB03f00d0.C01:
[testng] [2024-11-29 09:55:10,523] [pool-1-thread-2] Initializing /data/omar/FB03f03o2.DIB:
[testng] [2024-11-29 09:55:11,075] [pool-1-thread-7] Initializing /data/samples/plate-size/plate_B03f00d0.C01:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 45 minutes 37 seconds
Finished: SUCCESS